Transcript EGFR
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The EGFR Signaling
Pathway
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EGF
Epidermal Growth Factor (EGF)
Binds to Epidermal Growth Factor Receptor (EGFR)
Results in
Cell Growth
Cell Proliferation
Cell Differentiation
Controls through the EGFR signaling pathway
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Mouse EGF
From Wikipedia
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The EGFR Signaling Pathway
Overview
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The EGFR Signaling Pathway
Overview
Binds to EGF
Controls:
signaling adapter proteins:
accessory proteins, lack intrinsic enzymatic activity, mediate
specific protein-protein interactions that drive the formation of
protein complexes
Grb2
Shc
Enzyme PLCΥ
Guanine nucleotide exchange factor: Sos
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The EGFR Signaling Pathway
Binding of EGF
Molecules
EGF
R: Unbounded EGFR
Ra: Bounded EGFR
R2: Dimeric EGFR
Reactions
1.
EGF binds to monomeric EGFR
2.
EGF-bounded EGFRs dimerize
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The EGFR Signaling Pathway
Binding of EGF
# Ligand-receptor binding
egfr(l,r) + egf(r) <-> egfr(l!1,r).egf(r!1) kp1, km1
# Receptor-aggregation
egfr(l!1,r) + egfr(l!2,r) <-> egfr(l!1,r!3).egfr(l!2,r!3) kp2,km2
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The EGFR Signaling Pathway
Transphosphorylation of EGFR
Molecules
R2: Dimeric EGFR
RP: Transphosphorylated EGFR
Reactions
3.
Dimeric EGFR
transphosphorylation
4.
Dimeric EGFR
dephosphorylation
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The EGFR Signaling Pathway
Transphosphorylation of EGFR
# Transphosphorylation of egfr
egfr(r!1,Y1068~Y) -> egfr(r!1,Y1068~pY) kp3
egfr(r!1,Y1148~Y) -> egfr(r!1,Y1148~pY) kp3
#Dephosphorylayion
egfr(Y1068~pY) -> egfr(Y1068~Y) km3
egfr(Y1148~pY) -> egfr(Y1148~Y) km3
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The EGFR Signaling Pathway
Binding of PLCγ
Not Included in the BNGL File
Molecules
PLCΥ
PLCΥP: Phosphorylated PLCΥ
RP: EGFR transphosphorylated
at Y992
Reactions
5.
Binding of PLCΥ
6.
Phosphorylation of PLCΥ
7.
Binding of PLCΥP to RP at Y992
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The EGFR Signaling Pathway
Binding of Grb2
Molecules
Grb2
RP: EGFR transphosphorylated
at Y1068
Reactions
9.
Binding of Grb2 to RP at Y1068
10.
Binding of Sos to pY1068-Grb2
11.
Binding of PLCΥP to RP at 1068
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The EGFR Signaling Pathway
Binding of Grb2
# Y1068 activity
egfr(Y1068~pY) + Grb2(SH2,SH3) <-> egfr(Y1068~pY!1).Grb2(SH2!1,SH3)
kp9,km9
egfr(Y1068~pY) + Grb2(SH2,SH3!2) <-> egfr(Y1068~pY!1).Grb2(SH2!1,SH3!2)
kp11,km11
egfr(Y1068~pY!1).Grb2(SH2!1,SH3) + Sos(dom) <->
egfr(Y1068~pY!1).Grb2(SH2!1,SH3!2).Sos(dom!2) kp10,km10
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The EGFR Signaling Pathway
Binding of Shc
Molecules
Shc
ShcP: Phosphorylated Shc
RP: EGFR transphosphorylated
at Y1148/74
Reactions
13.
Binding of Shc to pY1148/74
14.
Phosphorylation of Shc
15.
Binding of ShcP to pY1148/74
17.
Binding of Grb2 to pY1148/74ShcP
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The EGFR Signaling Pathway
Binding of Shc
# Rule 13
egfr(Y1148~pY) + Shc(PTB,Y317~Y) <-> egfr(Y1148~pY!1).Shc(PTB!1,Y317~Y)
kp13,km13
# Rule 14
egfr(r!2,Y1148~pY!1).Shc(PTB!1,Y317~Y) ->
egfr(r!2,Y1148~pY!1).Shc(PTB!1,Y317~pY) kp14
# Rule 15
egfr(Y1148~pY) + Shc(PTB,Y317~pY) <-> egfr(Y1148~pY!1).Shc(PTB!1,Y317~pY)
kp15,km15
# Rule 17
egfr(Y1148~pY!1).Shc(PTB!1,Y317~pY) + Grb2(SH2,SH3) <->
egfr(Y1148~pY!1).Shc(PTB!1,Y317~pY!2).Grb2(SH2!2,SH3) kp17,km17
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The EGFR Signaling Pathway
Binding of Shc
Reactions
18.
Binding of ShcP-Grb2 to
pY1148/74
19.
Binding of Sos to pY1148/74ShcP-Grb2
20.
Binding of ShcP-Grb2-Sos to
pY1148/74
24.
Binding of Grb2-Sos to
pY1148/74-ShcP
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The EGFR Signaling Pathway
Binding of Shc
# Rule 18
egfr(Y1148~pY) + Shc(PTB,Y317~pY!1).Grb2(SH2!1,SH3) <->
egfr(Y1148~pY!2).Shc(PTB!2,Y317~pY!1).Grb2(SH2!1,SH3) kp18,km18
# Rule 19, note the pattern matching here
Shc(PTB!1,Y317~pY!2).Grb2(SH2!2,SH3) + Sos(dom) <->
Shc(PTB!1,Y317~pY!2).Grb2(SH2!2,SH3!3).Sos(dom!3) kp19,km19
# Rule 20
egfr(Y1148~pY) + Shc(PTB,Y317~pY!1).Grb2(SH2!1,SH3!3).Sos(dom!3) <->
egfr(Y1148~pY!2).Shc(PTB!2,Y317~pY!1).Grb2(SH2!1,SH3!3).Sos(dom!3) kp20,km20
# Rule 24
egfr(Y1148~pY!1).Shc(PTB!1,Y317~pY) + Grb2(SH2,SH3!3).Sos(dom!3) <->
egfr(Y1148~pY!1).Shc(PTB!1,Y317~pY!2).Grb2(SH2!2,SH3!3).Sos(dom!3) kp24,km24
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The EGFR Signaling Pathway
Cytosolic Reactions without EGFR
Reactions
12.
Binding of Grb2 and Sos
23.
Binding of Grb2-Sos to ShcP
22.
Binding of ShcP-Grb2 to Sos
21.
Binding of ShcP and Grb2
16.
Dephoshporylation of ShcP
8.
Dephoshphorylation of PLCΥ(Not
Included)
25.
Inactivation of PLCΥP (Not
Included)
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The EGFR Signaling Pathway
Cytosolic Reactions without EGFR
# Rule 12
Grb2(SH2,SH3) + Sos(dom) <-> Grb2(SH2,SH3!1).Sos(dom!1) kp12,km12
# Rule 23
Shc(PTB,Y317~pY) + Grb2(SH2,SH3!2) <-> Shc(PTB,Y317~pY!1).Grb2(SH2!1,SH3!2) kp23,km23
# Rule 22
Shc(PTB,Y317~pY!2).Grb2(SH2!2,SH3) + Sos(dom) <->
Shc(PTB,Y317~pY!2).Grb2(SH2!2,SH3!3).Sos(dom!3) kp22,km22
# Rule 21
Shc(PTB,Y317~pY) + Grb2(SH2,SH3) <-> Shc(PTB,Y317~pY!1).Grb2(SH2!1,SH3) kp21,km21
# Rule 16
Shc(PTB,Y317~pY) -> Shc(PTB,Y317~Y) km16
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The EGFR Signaling Pathway
Putting all together
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The END
Thank You!
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