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Commercial Benchmark: Herceptin • Antibody targeting HER2 cell surface receptor • Over expressed on certain breast cancers – Patients selected based on degree of over expression • 2nd antibody approved by FDA • $5.5 billion annualized worldwide sales in 2010, virtually all of which is in breast cancer • Each 1% royalty (UCLA) is worth $55M/year! 7/7/2015 1:28 PM 1 FDA Workshop on Criteria for use of Omnics-based Predictors in Clinical Trials Rockville, MD, June 23, 2011 Donna Roscoe, Ph.D. FDA- Criteria for Disease Biomarkers 1. The tissue sample or biomarker must be representative of the disease in the patient. 2. FDA requires a detailed biomarker assay protocol which shows that the assay is robust. The SOP should include quantitative information regarding the precision, sensitivity, specificity, linear range, and reproducibility of the biomarker assay. 3. The biomarker assay should yield similar results when the assay is done in several independent labs. 4. The applicant organization should provide an explanation for any differences observed in the results obtained with formalin-fixed tissues versus frozen tissues. 5. The FDA is usually not too concerned whether the biomarker analysis was done on the primary or the metastatic tumor. 6. Invasive biomarker assays will require IND approval from the FDA Biomarker Studies Conducted in the HCC Translational Research Lab CTO#101376 Phase 2 Trial of Ofatumumab and Lenalidomide in CLL. L. Costa, R. Stuart, D. Fernandes. HCC initiated study funded by GSK. Measure population of biomarker CD16+/CD56+ NK cells to see if Lenalidomide ↑ ADCC by Ofatumumab. Prevalence of Mast Cell Disease in Gulf War Illness Patients. L. Afrin and D. Fernandes. VA Merit Award submitted. Examine KitD816V and other kit mutations that may cause constitutive activation of kit and mast cell activation disease. Phase II trial of AS1411 →AraC in refractory AML. R. Stuart, D. Fernandes. Funded by Antisoma. Determine whether AS1411 is targeting nucleolin by measuring nucleolin and BCL-2 mRNA . Effect of AS1411 on the Levels of Nucleolin and Bcl-2 mRNAs % of Control Normalized to b-action 100 Nucleolin Bcl-2 80 60 40 20 0 0 24 48 Hours 72 96 Nucleolin overexpression in spleen sections from mice injected with human AML. Cells. 7/7/2015 1:28 PM 5 Cellular localization of nucleolin in malignant and normal breast cancer cells 7/7/2015 1:28 PM 7 Large Market Opportunity Cancer Cell Lines That Over-express Nucleolin and/or are Killed Subsequent to Nucleolin Inhibition Breast cancer MCF7, T-47D, BT-549, MDA-N, MDA-MB-231, ZR7S-1 Lung cancer A549, NCI-H322M, NCI-H460, EKVX, HOP-92, NCI-H299, CaLu1, NCI-H1385, NCI-H82, CaLu6 Prostate cancer DU145, PC-3, CA-HPV-10 Colon cancer HCC 2998, HT-29, KM12, HCT-116, SW620, HCT-15, LS174T Pancreatic cancer PANC-1, MIA-PaCa-2, PANC-1 Renal cell carcinoma 786-0, CAKI-1, RXF393, TK10, A498, ACHN, SN12C Ovarian cancer IGROV, OVCAR-3, OVCAR-4, OVCAR-5 Cervical cancer HeLa Leukemia & lymphoma CCRF-CEM, SR, HL60, K-562, RPMI-6226, U937, Meg0, MV4-11 Melanoma LOX-IMVI, SK-MEL-2, A375, SK-MEL-28, MDA-MB-435 Glioblastoma SF-268, U87-MG Neuroblastoma IMR 32, Lan 5 Sarcoma HT-1080 Gastric cancer KATOIII, HGC27 Data from NCI Tumor Cell Line Screen of AS1411; Bates et al, Exp Mol Path 86:151, 2009; Hoel et al., J. Immunol. 182:65.10, 2011