9. Introducing Organic Chemistry

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Transcript 9. Introducing Organic Chemistry

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Molecular and empirical formulae

There are many ways of representing organic compounds by using different formulae.

The

molecular formula

of a compound shows the number of each type of atom present in one molecule of the compound.

The

empirical formula

of a compound shows the simplest ratio of the atoms present.

Molecular formula

C 2 H 6 C 6 H 12 O 6 C 2 H 4 O 2

Empirical formula

CH 3 CH 2 O CH 2 O Neither the molecular nor empirical formula gives information about the structure of a molecule.

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Displayed formula of organic compounds

The

displayed formula

of a compound shows the arrangement of atoms in a molecule, as well as all the bonds.

Single bonds are represented by a single line, double bonds with two lines and triple bonds by three lines .

The displayed formula can show the different structures of compounds with the same molecular formulae.

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ethanol (C 2 H 6 O) methoxymethane (C 2 H 6 O)

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Structural formula of organic compounds

The

structural formula

of a compound shows how the atoms are arranged in a molecule and, in particular, shows which functional groups are present.

Unlike displayed formulae, structural formulae do not show single bonds, although double/triple bonds may be shown.

CH 3 CHClCH 3 H 2 C=CH 2 CH 3 C ≡N 2-chloropropane

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ethene ethanenitrile

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Displayed and structural formula activity

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Skeletal formula of organic compounds

The

skeletal formula

of a compound shows the bonds between carbon atoms, but not the atoms themselves. Hydrogen atoms are also omitted, but other atoms are shown.

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Types of formulae

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Functional groups and homologous series

A

functional group

is an atom or group of atoms responsible for the typical chemical reactions of a molecule.

A

homologous series

is a group of molecules with the same functional group but a different number of –CH 2 groups.

methanoic acid (HCOOH) ethanoic acid (CH 3 COOH) propanoic acid (CH 3 CH 2 COOH)

Functional groups determine the pattern of reactivity of a homologous series, whereas the carbon chain length determines physical properties such as melting/boiling points.

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Functional groups

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Homologous series and general formulae

The

general formula

of a homologous series can be used to calculate the molecular formula of any member of the series by substituting

n

for the number of carbon atoms.

For example, the general formula of a halogenoalkane is

C

n

H 2n+1 X

, where X is a halogen.

Example: what is the molecular formula of chloroethane? 1.

Write down the general formula:

2.

Write down the value of

n

:

C

n

H 2n+1 n = 2 X 3.

Substitute

n

into the general formula:

C 2 H 5 Cl

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Homologous series

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What is isomerism?

Isomers

are molecules with the same molecular formula (i.e. the same number and type of atoms) but in which the atoms are arranged in a different way.

There are two main categories of isomerism:

structural isomerism

and

stereoisomerism

.

 Structural isomers have different structural formulae.

Three types of structural isomerism are

chain isomerism

,

positional isomerism

and

functional group isomerism

.

 Stereoisomers have the same structural formula, but the 3D arrangement of atoms is different. Two types are

cis

–trans isomerism

and

optical isomerism

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Chain isomerism in alkanes

In

chain isomers

, the carbon chain is arranged differently. For example, hexane has several chain isomers, all with the molecular formula C 6 H 14 :

hexane

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3-methylpentane 2,3-dimethylbutane

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Positional isomerism

In

positional isomers

, the functional group is attached to a different carbon atom.

For example, chloropentane has several positional isomers, all with the molecular formula C 5 H 11 Cl:

1-chloropentane 2-chloropentane 3-chloropentane

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Positional isomerism in alkenes

Positional isomerism also exists in alkenes with four or more carbon atoms.

hex-1-ene

For example, hexene has several positional isomers, all with the molecular formula C 6 H 12 :

hex-2-ene hex-3-ene

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Functional group isomerism

Functional group isomers

contain different functional groups and so are members of different homologous series. For example, both alcohols and ethers have the general formula C

n

H 2

n

+2 O so they may be functional group isomers:

propanol (C 3 H 8 O) an alcohol

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methoxyethane (C 3 H 8 O) an ether

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Structural isomers activity

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Rotation around the C=C bond in alkenes

Molecules can rotate freely around single C-C covalent bonds, but not around C=C double bonds. This leads to type of stereoisomerism called

cis

trans isomerism

, in which isomers differ in the arrangement of the groups attached to the carbons in the double bonds.

is not the same as

These isomers cannot be superimposed on each other because the arrangement of the methyl groups is different.

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Cis

trans isomerism

If an alkyl group or atom other than hydrogen is attached to each carbon then the isomers can be named either

cis

(‘on the same side’) or

trans

(‘on the opposite side’).

cis-but-2-ene trans-but-2-ene cis-1,2-dichloroethene

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trans-1,2-dichloroethene

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Limitations of cistrans isomerism

In more complex organic compounds, in which multiple hydrogens have been substituted by different groups, isomers cannot be defined using the

cis

trans

notation.

For example, is it possible to identify which of these halogenoalkanes is the

cis

isomer and which is the

trans

isomer?

Instead, a different system is used for these type of molecules:

E –Z notation

.

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E –Z isomerism

The

E –Z notation

is used to identify stereoisomers that cannot be called

cis

or

trans

.

Isomers are identified as either E or Z depending on what ‘priority’ is given to the groups attached to the carbon atoms in the double bond. The priority of these groups is determined by a complex series of rules.

E

represents the German word ‘

entgegen

’, and corresponds to

trans

isomers. The highest priority groups are on the

opposite

side of the double bond.

Z

represents the German word ‘

zusammen

’, and corresponds to

cis

isomers. The highest priority groups are on the

same

side of the double bond.

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Optical isomerism

Another form of stereoisomerism is

optical isomerism

, in which a molecule can exist as two isomers that are non superimposable, mirror images of each other, just like a left hand and right hand.

optical isomers of the amino acid alanine

Optical isomers have the same physical properties, but they rotate

polarized light

in opposite directions.

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Stereoisomerism: true or false?

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Glossary

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What’s the keyword?

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Multiple-choice quiz

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