Transcript E. coli Calculates Solution to the Burnt Pancake

Microarrays for the Masses: Pedagogical Resources for High School through College
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A. Malcolm Campbell1,3, Laurie J. Heyer2,3, Mary Lee S. Ledbetter4,3, Laura L. M. Hoopes5,3, Todd T. Eckdahl6,3, Anne G. Rosenwald7,3, Edison Fowlks8,3, Nicholas Dovidio2,
Michael R. Gordon2, David Moskowitz2, Mackenzie L. Cowell1, J. Adam Abele2, Brian Akin2, Gavin Taylor2, Danielle Choi1, Parul Karnik2, Peter Lowry1, Jennifer M. Madden1,
Emily E. Oldham1,2, B. Daniel Pierce1, Allison Amore1, Sheena Bossie1, Max Citrin1, Erin Cobain1, Megan McDonald1, Marieta Solé1, Emily Wilson1, Matt Gemberling1, Kristen
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DeCelle , Karen Acker , Lyana Buckwold , Benjamin Whigham , Carolyn A. Zanta , Kathleen M. Gabric , Ben Kittinger , Lesli Adler , A. Jackie Ryan , William T. Hatfield .
1Biology
Department, 2Mathematics Department, Davidson College; 3Genome Consortium for Active Teaching (GCAT), 4Department of Biology, College of the Holy Cross, Worcester, MA; 5Department of Biology, Pomona College, Claremont, CA;
6Department of Biology, Missouri Western State University, Saint Joseph, MO; 7Department of Biology, Georgetown University, Washington, DC; 8Department of Biology, Hampton University, Hampton, VA, 9Howard Hughes Medical Institute
Biotechnology Education and Outreach Program, University of Illinois at Urbana-Champaign, Urbana, IL; 10Hinsdale Central High School, Hinsdale, IL; and 11Montgomery County Public Schools, Rockville, MD.
Open Access Animations & Online Clustering
Top animation is 3 minutes long, bottom one is
30 minutes with interactive questions.
MAGIC Tool Software
Interactive clustering site allows students to
explore how clustering works.
Improved display methods, gridding, spot flagging, statistical analysis, and JTreeView connectivity
www.bio.davidson.edu/courses/genomics/chip/chip.html
http://gcat.davidson.edu/Pirelli/index.htm
http://gcat.davidson.edu/DGPB/clust/clustering.htm
Wet Lab Simulation & Math Module
www.bio.davidson.edu/MAGIC
Do-It-Yourself Teaching Chips
Students can design and print their own mini-chips with near 100% success.
Introductory Curriculum with paper exercise, wet lab simulation
is modular and flexible, based on cancer case study.
Mathematics module allows students to use math to
understand method and basic biology.
www.bio.davidson.edu/projects/GCAT/HSChips/HSchips.html
Online Spot Synthesizer
Upload spreadsheet, select pattern, and produce tiff files for training and testing student proficiency.
www.bio.davidson.edu/projects/GCAT/Spot_synthesizer/Spot_synthesizer.html
Thanks to NSF, HHMI, Davidson College, the Waksman Foundation,
the James G. Martin Genomics Program, and the Associated Colleges of the South.
www.bio.davidson.edu/projects/GCAT/DoItYourselfChips/Self_Chips.html
Research Protocols and Chips
GCAT supports faculty by providing microarrays (HHMI funded) and hands-on, free workshops (NSF funded).
www.bio.davidson.edu/GCAT
http://gcat.davidson.edu/masses.html
2007 workshop participants and one of the their
chips. Workshop in 2008 is full and 2009
workshop will accept applications in 2008.
[email protected]