Transcript Biology - Welcome to HSLS | HSLS

Biology in Silico : Online Tools for “Omics”
WC R C R E TRE AT
SE PTE M B ER 6 TH , 20 1 4
A N SUM AN C H AT TO PADHYAY, PH D
H E A D, M O L E C ULAR B I O LO GY I N F ORMATIO N SE R VI CE
H E A LTH SC IE N C ES L I B R ARY SY ST E M
U N I VE RSITY O F PI T T SB U RGH
Topics
HSLS Molecular Biology
Information Service
Library Licensed
Bioinformatics Tools
Search Engine, InfoBoosters
& ReadingAssist
http://hsls.libguides.com/wcrc
Information Overload
285K
• Breast Cancer
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73 K
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• Schizophrenia
• BRCA1
p53
Information Overload
Growth of Molecular Databases and Tools
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Molecular Biology Information
Service
Ansuman Chattopadhyay, Ph.D.
[email protected]
•1990-1996
University of Nebraska-Lincoln
PhD. in Biochemistry
Protein synthesis initiation in eukaryotic system
•1997-2001
Vanderbilt University School of Medicine, Nashville
Research Fellow
Epidermal Growth Factor (EGF) mediated signal transduction
•2001-2002
Cellomics Inc., Pittsburgh
Knowledge Engineer
•2002- 2006
Information Specialist in Molecular Biology and Genetics
HSLS, University of Pittsburgh
•2006- Present
Head, Molecular Biology Information Service
HSLS, University of Pittsburgh
Bioinformatics Service @ Health Sciences Libraries
1994 : University of Washington
2002: University of Pittsburgh
2006 …
University of Florida, Gainesville
Washington University, St. Louis
Northwestern University, Chicago
University of Southern California, LA
University of California, San Francisco
Harvard University
University of Rochester
……………………
Molecular Biology Information Service
Workshops
Bioinformatics
Consultations
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Web Dev
Software
Licensing
http://www.hsls.pitt.edu/molbio
In silico Support
Literature
Search
Sequence
Analysis
Omics
Data
Analysis
HSLS Licensed Bioinformatics Software
Software Access
http://www.hsls.pitt.edu/molbio
ePath3D
ePath3D
ePath3D
Bioinformatics Workshops
CLCBio – RNA Seq .. October 7th, 2014
CLCBio – Exome, Whole Genome Seq, October 8th,2014
UCSC Genome Browser Road Show .. December 4th ,5th , 2014
Web Development
 Life Sciences Search Engine
 InfoBoosters
 ReadingAssist
Search Engine for Life Scientists
http://www.hsls.pitt.edu/molbio
Search Engine for Life Scientists
Database Issue
Web Server Issue
Software and Database articles
Databases/Tools : CRISPR
Challenges for Biomedical Scientists
what is its
function ?
how is it
calculated ?
workflow: copy, paste, and Google
what is its
structure?
www.hsls.pitt.edu/infoboosters
InfoBoosters
InfoBoosters
InfoBoosters
Infoboosters
Infoboosters
InfoBoosters
What is its
function ?
How is it calculated
?
What is its
structure?
Data Integration
InfoBoosters
Create Your Own InfoBooster
WWW.hsls.pitt.edu/infoboosters
InfoBooster Generator
Clinical Trials.gov
1
InfoBooster Generator
Go to the Clinical Trials.gov Website and do a search with a one-word search term, such as asthma
2
InfoBooster Generator
COPY the URL from the search result page
InfoBooster Generator
WWW.hsls.pitt.edu/molbio/infoboosters
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InfoBooster Generator
InfoBooster Generator
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ReadingAssist
ReadingAssist
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