Transcript Document

(A) RBE_0090 Stress induced DNA-binding protein.
(B) RBE_0387 ABC transporter ATP-binding protein.
Xanthomonas.campestris.Q8P6M1 XANCP
Xanthomonas.campestris.Q4UXJ0 XANCP
Xanthomonas.axonopodis.Q8PHX5 XANAC
100
Xanthomonas.oryzae.Q5H243 XANOR
Xylella.fastidiosa.Q9PDJ7 XYLFA
100 Xylella.fastidiosa.Q87DR3 XYLFT
59
Rhodopseudomonas.palustris.Q6N663 RHOPA
65
100
Azoarcus.sp.Q5P645 AZOSE
Azotobacter.vinelandii.Q4ISI9 AZOVI
Bordetella.pertussis.Q7VXW0 BORPE
70
Bordetella.bronchiseptica.Q7WIB6 BORBR
100
Bordetella.parapertussis.Q7W6E7 BORPA
Leptospira.interrogans.Q8F098 LEPIN
100 Leptospira.interrogans.Q72UQ1 LEPIC
Chromobacterium.violaceum.Q7NQ87 CHRVO
100 Burkholderia.mallei.Q62H71 BURMA
100
Burkholderia.pseudomallei.Q8KR86 BURPS
Burkholderia.cenocepacia.Q4LNR1 9BURK
Ralstonia.solanacearum.Q8XVY8 RALSO
Anabaena.sp.Q8YPP7 ANASP
Pseudomonas.aeruginosa.Q9I4Z7 PSEAE
Pseudomonas.putida.Q88NJ7 PSEPK
93
Pseudomonas.fluorescens.Q4K7D3 PSEF5
98
Pseudomonas.syringae.Q87Y29 PSESM
60
100 Pseudomonas.syringae.Q4ZWL7 PSESY
Shewanella.oneidensis.Q8EHQ9 SHEON
Synechococcus.sp.Q5N285 SYNP6
Bdellovibrio.bacteriovorus.Q6MNL2 BDEBA
Vibrio.parahaemolyticus.Q87J01 VIBPA
100
Synechocystis.sp.Y1894 SYNY3
Caulobacter.crescentus.Q9A4G1 CAUCR
Protochlamydia.amoebophila.Q6MC26 PARUW
Rickettsia.bellii.RBE_0090
80
100
Rickettsia.felis.RF_1271
Rickettsia.prowazekii.RP806
Legionella.jeonii.Q6PL08 AMOPS
Legionella.pneumophila.Q5X761 LEGPA
100
100 Legionella.pneumophila.Q5ZXP2 LEGPH
72 Legionella.pneumophila.Q5WYL1 LEGPL
76
57
100
30
9
6
55
20
27
60
43
82
40
98
91
Escherichia.coli.YBIT ECOLI
Escherichia.coli.YBIT ECOL6
Escherichia.coli.YBIT ECO57
Shigella.flexneri.Q83LT8 SHIFL
100
Salmonella.choleraesuis.Q57RC0 SALCH
Salmonella.typhimurium.Q8ZQN0 SALTY
85
100 Salmonella.paratyphi-a.Q5PGQ4 SALPA
Salmonella.typhi.Q8Z870 SALTI
Erwinia.chrysanthemi.Q93KB6 ERWCH
Erwinia.carotovora.Q6D2T5 ERWCT
10056
Yersinia.pestis.Q8ZG28 YERPE
99
Yersinia.pseudotuberculosis.Q66C98 YERPS
100
Yersinia.pestis.Q8D068 YERPE
Photorhabdus.luminescens.Q7N6L2 PHOLL
Methylococcus.capsulatus.Q60CH9 METCA
Pseudomonas.aeruginosa.Q9I2E0 PSEAE
88
Azotobacter.vinelandii.Q4IZF8 AZOVI
100 Pseudomonas.syringae.Q4ZTI8 PSESY
100
Pseudomonas.syringae.Q881W6 PSESM
100
Pseudomonas.fluorescens.Q4KC20 PSEF5
47
Pseudomonas.putida.Q88IR3 PSEPK
Idiomarina.loihiensis.Q5QX19 IDILO
Shewanella.oneidensis.Q8EE64 SHEON
Leptospira.interrogans.Q72UW9 LEPIC
100 Leptospira.interrogans.Q8F013 LEPIN
Wolinella.succinogenes.Q7M7M0 WOLSU
Borrelia.garinii.Q660D2 BORGA
Clostridium.tetani.Q897Y9 CLOTE
Clostridium.acetobutylicum.Q97F07 CLOAB
Staphylococcus.aureus
100
Anaeromyxobacter.dehalogenans.Q4NTQ7 9DE
Protochlamydia.amoebophila.Q6MCG4 PARUW
Rickettsia.bellii.RBE_0387
77
100
86
77
87
100
95
97
52
96
100
95
100
0.1
0.1
(C) RBE_0461 Acetyltransferase.
(D) RBE_0462 Unknown.
Legionella.pneumophila.Q5ZTJ0 LEGPH
Legionella.pneumophila.Q5X3C7 LEGPA
Legionella.pneumophila.Q5X0W0 LEGPA
Rickettsia.bellii.RBE_0461
Oceanobacillus.iheyensis.Q8CV24 OCEIH
Caulobacter.crescentus.Q9ABU9 CAUCR
68
Pseudomonas.putida.Q88GK9 PSEPK
Mycoplasma.penetrans.Q8EVS7 MYCPE
Bacillus.halodurans.Q9KDW5 BACHD
82 Bacillus.cereus.Q73BP5 BACC1
Bacillus.cereus.Q4MK24 BACCE
98 Bacillus.anthracis.Q81TK7 BACAN
85 Bacillus.cereus.Q63EB8 BACCZ
67 Bacillus.thuringiensis.Q6HLT5 BACHK
Rickettsia.felis.RF_0776
Agrobacterium.tumefaciens.Q7D3T1 AGRT5
100
100 Agrobacterium.tumefaciens.Q9WWC5 9RHIZ
100
48
89
40
36
41
96
36
51
0.5
85
31
27
0.2
Fig. S5
Klebsiella.pneumoniae.Q6DSN3 KLEPN
Klebsiella.pneumoniae.Q93TA7 KLEPN
Pseudomonas.aeruginosa.Q70E12 PSEAE
Escherichia.coli.Q8GDC2 ECOLI
Klebsiella.pneumoniae.Q6DSN1 KLEPN
Klebsiella.pneumoniae.Q93TB7 KLEPN
Klebsiella.pneumoniae.Q9L8F8 KLEPN
9
Klebsiella.pneumoniae.Q6DSN4 KLEPN
Klebsiella.pneumoniae.Q93TA6 KLEPN
Klebsiella.pneumoniae.Q7BK10 KLEPN
Klebsiella.pneumoniae.Q6DSP0 KLEPN
15
Acinetobacter.baumannii.O05287 ACIBA
Klebsiella.pneumoniae.Q6DSP1 KLEPN
29 Klebsiella.pneumoniae.Q93TC1 KLEPN
Klebsiella.pneumoniae.Q6DSQ4 KLEPN
25 Klebsiella.pneumoniae.Q6DSM3 KLEPN
100 Klebsiella.pneumoniae.Q93TB4 KLEPN
Salmonella.typhimurium.Q8GLI5 SALTY
Gram-negative.bacterium.Q6ZXT5 9BACT
Rhizobium.meliloti.Q92TA8 RHIME
Rhizobium.loti.Q98CT9 RHILO
Legionella.pneumophila.Q5WU50 LEGPL
Legionella.pneumophila.Q5ZSW8 LEGPH
100
96 Legionella.pneumophila.Q5X2C9 LEGPA
Rickettsia.bellii.RBE_0462
Protochlamydia.amoebophila.Q6MBI9 PARUW
Symbiobacterium.thermophilum.Q67L44 SYMT
Staphylococcus.epidermidis.Q7DI56 STAEP
Staphylococcus.warneri.Q7WTC3 STAWA
Staphylococcus.aureus.AACA STAAU
Staphylococcus.sciuri.Q7ATH9 9STAP
Staphylococcus.aureus.AACA STAAM
Staphylococcus.haemolyticus.Q4L605 STAHJ
100
Enterococcus.faecalis.AACA ENTFA
Staphylococcus.aureus.Q7DG31 STAAU
Enterococcus.faecium.Q52S23 ENTFC
Staphylococcus.warneri.Q7ATH7 STAWA
Staphylococcus.epidermidis.Q5HMP3 STAEQ
(E) RBE_0486 Bacterial transcription activator, effector
binding domain.
(F) RBE_0692 Unkown.
Bacteroides.fragilis.Q650B5 BACFR
Bacteroides.fragilis.Q5LIX2 BACFN
Chlorobium.tepidum.Q8KCV8 CHLTE
Porphyromonas.gingivalis.Q7MV52 PORGI
Bdellovibrio.bacteriovorus.Q6MMJ7 BDEBA
Rickettsia.bellii.RBE_0692
Legionella.pneumophila.Q5WS38 LEGPA
Rhodopirellula.baltica.Q7UE78 RHOBA
Nocardia.farcinica.Q5YPH0 NOCFA
Entamoeba.histolytica.Q518E5 ENTHI
Bacillus.clausii.Q5WI41 BACSK
uncultured.archaeon.Q5Y0L2 9ARCH
Methanosarcina.mazei.Q8PZC8 METMA
Methanosarcina.acetivorans.Q8TJV4 METAC
Dictyostelium.discoideum.Q54FY0 DICDI
Listeria.innocua.Q929C9 LISIN
100
Listeria.monocytogenes.Q71XC0 LISMF
100
47
Shewanella.oneidensis.Q8EG52 SHEON
Pseudomonas.fluorescens.Q4KB68 PSEF5
26
Legionella.pneumophila.Q5WS39 LEGPA
20
31
Psychrobacter.arcticum.Q4FU87 9GAMM
24
Francisella.tularensis.Q5NE62 FRATT
Listeria.innocua.Q928J8 LISIN
Listeria.monocytogenes.Q8Y4J8 LISMO
13
100
99 Listeria.monocytogenes.Q71WY7 LISMF
Bdellovibrio.bacteriovorus.Q6MPN7 BDEBA
5
Leptospira.interrogans.Q8F8F9 LEPIN
13
100 Leptospira.interrogans.Q72N58 LEPIC
2
Clostridium.acetobutylicum.Q97DI4 CLOAB
Bacillus.subtilis.O34637 BACSU
9
Bacillus.licheniformis.Q65IN3 BACLD
99
100 Bacillus.licheniformis.Q62U40 BACLD
Bacillus.halodurans.Q9KF27 BACHD
Bacillus.cereus.Q816D7 BACCR
Bacillus.cereus.Q4MRA6 BACCE
100
Bacillus.anthracis.Q81XR9 BACAN
82
Bacillus.cereus.Q72YF5 BACC1
66
20 Bacillus.cereus.Q632D4 BACCZ
48 Bacillus.thuringiensis.Q6HBX4 BACHK
Rickettsia.bellii.RBE_0486
99
83
Rickettsia.felis.RF_0773
Protochlamydia.amoebophila.Q6MF60 PARUW
Clostridium.tetani.Q894V2 CLOTE
Bacillus.halodurans.Q9K766 BACHD
100
Bacillus.cereus.Q81GS1 BACCR
99
32 Bacillus.cereus.Q73C51 BACC1
100 Bacillus.cereus.Q4MPK0 BACCE
36 Bacillus.cereus.Q63EP7 BACCZ
59 Bacillus.anthracis.Q81TY6 BACAN
91 Bacillus.thuringiensis.Q6HM70 BACHK
55
32
7
9
2552
87
64
74
98
73
100
100
0.2
(H) RBE_0868 Sec7 domain containing protein.
0.2
81
100
30
(G) RBE_0860 Acetyltransferase.
40
Streptococcus.pneumoniae.Q8CYJ9 STRR6
Streptococcus.pneumoniae.Q97PT3 STRPN
Shewanella.oneidensis.Q8EAR5 SHEON
Enterococcus.faecium.Q5VJY5 ENTFC
100 Lactobacillus.curvatus.Q05643 LACCU
Erwinia.amylovora.Q6TFS0 ERWAM
99
Erwinia.carotovora.Q6D8N8 ERWCT
Enterobacter.aerogenes.Q8GC85 ENTAE
Enterobacter.agglomerans.Q937I1 ENTAG
100
Erwinia.amylovora.Q46650 ERWAM
Streptomyces.avermitilis.Q82HD6 STRAW
100
Streptomyces.coelicolor.Q9K3S9 STRCO
Chromobacterium.violaceum.Q7NY59 CHRVO
Burkholderia.cenocepacia.Q4LP85 9BURK
Photorhabdus.luminescens.Q7N4X0 PHOLL
Pseudomonas.fluorescens.Q4KE50 PSEF5
Pseudomonas.syringae.Q4ZY45 PSESY
100
Pseudomonas.syringae.Q888L5 PSESM
Rickettsia.bellii.RBE_0860
100
96
Rickettsia.felis.RF_0354
Legionella.pneumophila.Q5WS26 LEGPA
Legionella.pneumophila.Q5WS20 LEGPA
Vibrio.fischeri.Q5DZR4 VIBF1
Legionella.pneumophila.Q5WS76 LEGPA
100 Bacillus.thuringiensis.Q6HI42 BACHK
Bacillus.cereus.Q81CQ6 BACCR
Bacillus.cereus.Q81CG1 BACCR
Bacillus.cereus.Q4MGA6 BACCE
100
Bacillus.cereus.Q736R6 BACC1
62
Bacillus.cereus.Q63AE5
BACCZ
73
Bacillus.anthracis.Q81PJ6
BACAN
56
27 Bacillus.thuringiensis.Q6HHT6 BACHK
100 Vibrio.vulnificus.Q7MDB8 VIBVY
Vibrio.vulnificus.Q8D6G3 VIBVU
Legionella.pneumophila.Q5X3C7 LEGPA
100
Legionella.pneumophila.Q5ZTJ0 LEGPH
Vibrio.vulnificus.Q7MD63 VIBVY
100 Vibrio.vulnificus.Q8D6B9 VIBVU
100
50
25
21
4
52
47
6
98
39
39
100
55
23
2
51
92
45
74
100
Mus.musculus.Q570Y7 MOUSE
Mus.musculus.CYH1 MOUSE
96 Mus.musculus.Q76MU4 MOUSE
Mus.musculus.Q9ESS4 MOUSE
Mus.musculus.Q8K3E8 MOUSE
65
Rattus.norvegicus.CYH1 RAT
52 Homo.sapiens.CYH1 HUMAN
88
Cercopithecus.aethiops.CYH1
CERAE
40
Gallus.gallus.Q5ZM97 CHICK
42
Brachydanio.rerio.Q6PC26 BRARE
Brachydanio.rerio.Q6PW01 BRARE
82
82
Tetraodon.nigroviridis.Q4SGL2 TETNG
Xenopus.laevis.Q6GLR2 XENLA
65
100 Xenopus.tropicalis.Q6DF41 XENTR
Tetraodon.nigroviridis.Q4RJK9 TETNG
95
100 Tetraodon.nigroviridis.Q4S4J4 TETNG
Cercopithecus.aethiops.Q76MY7 CERAE
62
100 Rattus.norvegicus.Q6IRG6 RAT
97
Mus.musculus.Q99KH2 MOUSE
100
Tetraodon.nigroviridis.Q4RGG5 TETNG
Anopheles.gambiae.Q7PPK6 ANOGA
100
Drosophila.melanogaster.Q9V9Q6 DROME
Debaryomyces.hansenii.Q6BWN2 DEBHA
Candida.glabrata.Q6FVM0 CANGA
Arabidopsis.thaliana.Q9LPC5 ARATH
93 Homo.sapiens.Q86TH5 HUMAN
100 Homo.sapiens.BIG2 HUMAN
Rattus.norvegicus.Q7TSU1 RAT
Tetraodon.nigroviridis.Q4SFB7 TETNG
100
Homo.sapiens.BIG1
HUMAN
93
55 Bos.taurus.BIG1 BOVIN
20 Homo.sapiens.Q59FY5 HUMAN
Ustilago.maydis.Q4PFF1 USTMA
Rickettsia.felis.RF_0585
100
100
Rickettsia.prowazekii.RP374
Rickettsia.bellii.RBE_0868
Legionella.pneumophila.Q5WV98 LEGPL
Legionella.pneumophila.Q5X3V2 LEGPA
100
Legionella.pneumophila.Q5ZU58 LEGPH
72
100 Legionella.pneumophila.Q8RT31 LEGPN
0.1
(I) RBE_1344 EMAP domain containing protein.
38
59
14
13
4
33
21
59
39
0.2
25
20
0.1
Fig. S5
Bacillus.anthracis.Q81RI2 BACAN
Bacillus.thuringiensis.Q6HJR6 BACHK
Bacillus.cereus.Q63CA4 BACCZ
Bacillus.cereus.Q739K5 BACC1
100
Bacillus.cereus.Q4MRJ7 BACCE
34
Bacillus.cereus.Q81ED4 BACCR
41
Bacillus.licheniformis.Q65IP5 BACLD
Bacillus.subtilis.CSAA BACSU
51
100
Bacillus.subtilis.Q4PIY4 BACSU
77
Bacillus.halodurans.Q9KBY9 BACHD
Oceanobacillus.iheyensis.Q8ELP7 OCEIH
Bacillus.cereus.Q4V1J0 BACCZ
Thermoanaerobacter.tengcongensis.Q8RDK8
Thermus.thermophilus.Q5SKY3 THET8
74
Thermus.thermophilus.Q9AQH8 THETH
100
Thermus.thermophilus.Q72LC5 THET2
Dictyostelium.discoideum.Q54B13 DICDI
Candidatus.Pelagibacter.Q4FL08 9RICK
Thermoplasma.acidophilum.Q9HJC4 THEAC
100 Bordetella.parapertussis.Q7W9Y8 BORPA
100
Bordetella.bronchiseptica.Q7WHT9 BORBR
Synechococcus.sp.Q5N2E9 SYNP6
Silicibacter.pomeroyi.Q5LUZ0 SILPO
Erythrobacter.litoralis.Q4TM90 9SPHN
85
Bradyrhizobium.japonicum.Q89N08 BRAJA
Agrobacterium.tumefaciens.Q8UDB9 AGRT5
82
Rhizobium.meliloti.Q92N79 RHIME
Rhizobium.loti.Q98HX2 RHILO
70
Brucella.suis.Q8FZF9 BRUSU
55
Brucella.melitensis.Q8YIF3 BRUME
100
Brucella.abortus.Q57BZ2 BRUAB
Photorhabdus.luminescens.Q7N5X0 PHOLL
94
Pseudomonas.aeruginosa.Q9HZ19 PSEAE
Rhodopirellula.baltica.Q7UJR6 RHOBA
100
Rhodopirellula.baltica.Q7UE82 RHOBA
Desulfovibrio.vulgaris.Q72G33 DESVH
Rickettsia.bellii.RBE_1344
Legionella.pneumophila.Q5WTQ5 LEGPL
100
Legionella.pneumophila.Q5X1X7 LEGPA
100
77 Legionella.pneumophila.Q5ZSH0 LEGPH
55
28
44
94