Transcript Profiles Research Networking Software Users Group Meeting

Profiles Research Networking Software
Users Group Meeting
http://profiles.catalyst.harvard.edu
July 19, 2013
Agenda
•
•
•
•
Welcome to New Members
Upcoming Events
Updates
Identifying Translational Science
Profiles Users Group Members
UCSF
Fred Hutchinson CRC
Oregon Health Sci U
Lawrence Berkeley
UC Davis (CBST)
Touro University
U Southern California
UCLA
UC San Diego
Charles Drew
U Hawaii
Arizona State
Montana State
U Colorado Denver
U Nebraska-Lincoln
UW Madison
UW-Milwaukee
U Illinois
U Chicago
Baylor College Med
UT Southwestern
UT Houston
Midwestern State Univ
Jackson State (RTRN)
Ohio State
Cincinnati Children’s
Case Western
U Kentucky
Vanderbilt Stem Cell
U Arkansas Little Rock
U Alabama Birmingham
Tulane University
University of the South Pacific (Fiji)
Velammal Engineering College (India)
University of Limpopo (South Africa)
Nati Sci Lib, Chinese Acad of Sci (China)
Clinical & Biomedical Computing Ltd (UK)
Jonkoping University Engineering School (Sweden)
Universidad Nacional Autonoma de Mexico (Mexico)
Ministério da Ciência e Tecnologia e Inovação (Brazil)
Jaypee University of Information Technology (India)
Zakir Hussain College of Engineering & Technology (India)
Faculdade de Engenharia da Universidade do Porto (Portugal)
Centre Interdisciplinaire de Nanoscience de Marseille (France)
Harvard
Univ Minnesota
Dartmouth
Univ Mass
Boston Univ
Tufts Univ
Boston VA
Rensselaer
Univ Connecticut
Univ Rochester
NYU Med Ctr
Long Island University
Stony Brook University
Mount Sinai Sch of Med
New Jersey Med Sch
MedMeme
Thomas Jefferson
UPenn
Johns Hopkins
USUHS-CNRM
NIH
George Wash U
Penn State
Childrens Nat Med Ctr
Duke Cancer Institute
Wake Forest
Leadership in Med
HSSC
Georgia Tech
Piedmont Healthcare
Emory University
Symplectic Limited (UK)
University of Dundee (UK)
McGill University (Canada)
Finders University (Australia)
University of Cambridge (UK)
Erasmus University (Brussels)
Makerere University (Uganda)
Elysium, Geneva (Switzerland)
University of Calgary (Canada)
University of Leuven (Belgium)
South-Valley University (Egypt)
University of Salzburg (Austria)
Beijing Normal University (China)
http://profiles.ucdenver.edu
University Spotlights
Harvard University
UCSF
U. Rochester Med Center
University of Minnesota
http://connects.catalyst.harvard.edu
http://profiles.ucsf.edu
http://urmc.rochester.edu/profiles
http://profiles.ahc.umn.edu
South Carolina
UConn Health Center
UMASS Medical School
Penn State
http://profiles.healthsciencessc.org
http://profiles.uconn.edu
http://profiles.umassmed.edu
http://profiles.psu.edu
Wake Forest Medicne
Boston University
RTRN (18 RCMI Institutions)
Baylor College of Med
http://profiles.tsi.wakehealth.edu
http://profiles.bumc.bu.edu
http://rtrnprofiles.rtrn.net/profilesweb
http://profiles.viictr.org
Upcoming Events
• VIVO Annual Conference, St. Louis, Missouri, August 14-16,
2013 [includes a Profiles RNS Workshop]
• 3rd Global TechMining Conference (Text-mining, Analysis,
and Visualization), Atlanta, Georgia, September 25, 2013
• American Medical Informatics Association (AMIA) Annual
Symposium, Washington, DC, November 16-20, 2013
Identifying Translational Science
Image from http://catalyst.harvard.edu
• T1-T4 is qualitative, no consensus on precise definition.
• Can a bibliometric technique quantitatively identify translation?
• Weber GM. Identifying translational science within the triangle of
biomedicine. J Transl Med. 2013 May 24;11:126. doi:
10.1186/1479-5876-11-126.
• http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23705970
Research Levels - Francis Narin 1976
Level Name
Category
Prototype Journals
1
Clinical
Observation
Clinical
Medicine
The Journal of the American
Medical Association (JAMA)
2
Clinical Mix
Clinical
Medicine
New England Journal of
Medicine (NEJM)
3
Clinical
Investigation
Biomedical Journal of Clinical Investigation
Research
(JCI)
4
Basic Research Biomedical The Journal of Biological
Research
Chemistry (JBC)
• Narin assigns other journals to a level based on which prototype
journals reference it most.
• Grant Lewison (2004) classifies articles based on whether their
titles include one of 100 “basic” or 100 “clinical” keywords.
ACH Classification – Weber 2013
• Based on MeSH terms assigned to articles
• “H”: Humans
B01.050.150.900.649.801.400.112.400.400 (Human),
M01 (Person)
• “A”: Animals
B01 (Eukaryota) [except Human]
• “C”: Cells and Molecules
A11 (Cells), B02 (Archaea), B03 (Bacteria), B04 (Viruses),
G02.111.570 (Molecular Structures),
G02.149 (Chemical Processes)
• If multiple terms then AC, AH, CH, ACH
ACH Classification – Weber 2013
Category
A
C
H
AC
AH
CH
ACH
None
Number of
Articles
1,878,604
826,426
8,676,294
2,015,181
611,098
1,581,218
714,372
3,728,996
Percent of
PubMed
Percent in
PMC
9.4%
4.1%
43.3%
10.1%
3.1%
7.9%
3.6%
18.6%
5.5
17.1
4.9
13.5
6.3
11.3
15.2
7.6
Triangle of
Biomedicine
Triangle of
Biomedicine:
Disciplines
Comparison to Research Levels
C AC ACH A
CH
AH
H
Basic
Research
Level 4
Basic
Research
(JBC)
Clinical
Medicine
Level 3
Clinical
Investigation
(JCI)
Level 2
Clinical
Mix
(NEJM)
Level 1
Clinical
Observation
(JAMA)
C
AC
A
ACH
AH
CH
H
Clinical
Medicine
Triangle of
Biomedicine:
Changes
over Time
Triangle of
Biomedicine:
Citation
Flow
Triangle of
Biomedicine:
Harvard
Faculty
Triangle of
Biomedicine:
Harvard
Faculty
Limitations
• NLM takes a year or more to assign MeSH
terms to articles.
• Would the results be different using a
commercial dataset?
• “H” category very large. Should there be a “P”
category for health practice?
Weber GM. Identifying translational science within the triangle of biomedicine. J
Transl Med. 2013 May 24;11:126. doi: 10.1186/1479-5876-11-126.
http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23705970