Transcript Introduction

Slicer 3 Tutorial
The SPL Abdominal Atlas
Ion-Florin Talos, M.D.
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Acknowledgments
NIH P41RR013218 (Neuroimage Analysis Center)
NIH U54EB005149 (NA-MIC)
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Disclaimer
It is the responsibility of the user of 3DSlicer
to comply with both the terms of the license
and with the applicable laws, regulations
and rules.
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Material
• Slicer 3
http://www.slicer.org/pages/Special:Slicer_Downloads/Release
Atlas data set
http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101
• CT
• Labels
• 3D-models
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Learning Objectives
• Loading the atlas data
• Creating and displaying
customized 3D-views of
anatomy
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Prerequisites
• Slicer Training
Slicer 3 Training 1: Loading and Viewing
Data
http://www.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101
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Overview
• Part 1: Loading the Abdominal Atlas Data
• Part 2: Creating and Displaying
Customized 3D anatomical Views
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Loading the Abdominal Atlas Data
Slicer can load:
• Anatomic grayscale data (CT, MRI)
………………………………………….
• Label maps……………………………
• 3D-Models………………………………
• MRML Scenes ……………………….
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Loading the Atlas Data
Select “File”
-> “Load Scene”
In the pop-up window, select the file
named Abdominal_Atlas2008.mrml,
then click
“Open”
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Loading the Atlas Data
3D-models
CT with overlaid
label maps
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Overview
• Part 1: Loading the Brain Atlas Data
• Part 2: Creating and displaying
customized 3D anatomical views
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Creating customized 3D-Views
By taking advantage of the ability to
selectively display 3D-models,
customized 3D-views of anatomy
can be created
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Customized 3D-Views
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Creating customized 3D-Views (1)
Select the “Models” module
Select the “Display” tab
From the pull-down menu, select
the models of interest, then click
the checkbox, in order to make
them visible in the 3D-view; to
remove models from the 3D-view,
uncheck the box
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Creating customized 3D-Views (2)
Select the “Data” module
Click “Create Scene Snapshot”;
when prompted, select a name
for your customized 3D-view
(e.g. Portal Circulation)
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Creating customized 3D-Views (3)
To switch between different
customized 3D-views select the
view you wish to display from the
pull-down menu, then click
“Restore”
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