Transcript Sample problems, nets, tutorials

BioPSE Examples
BioPSE Examples:
Networks, Datasets,
Tutorials, and PowerApps
NCRR
Example Networks (Nets)
BioPSE Examples
Located in
SCIRun/src/{PKG}/nets/
Major nets (applications)
Minor nets (module demos)
NCRR
build-fem-elem-leadfield.net
BioPSE Examples
NCRR
dipole-localization-leadfield-vis.net
BioPSE Examples
NCRR
build-misfit-and-localize.net
BioPSE Examples
NCRR
Example Networks (Nets)
BioPSE Examples
Located in SCIRun/src/{PKG}/nets/
Major nets (applications)
Minor nets (module demos)
NCRR
showmatrix.net
BioPSE Examples
NCRR
show-text.net
BioPSE Examples
NCRR
Example Datasets
BioPSE Examples
Quic kTime™ and a
TIFF (Unc ompres sed) dec ompres sor
are needed to see this pic ture.
Quic kTime™ and a
Quic kTime™ and a
TIFF (Unc ompres sed) dec ompres sor
TIFF (Unc ompres sed) dec ompres sor are needed to see this pic ture.
are needed to see this pic ture.
Quic kTime™ and a
TIFF (Unc ompres sed) dec ompres sor
are needed to see this pic ture.
QuickTime™ and a
TIFF (Uncompress ed) dec ompres sor
are needed to s ee this pic ture.
Quic kTime™ and a
Quic kTime™ and a
Quic kTime™ and a
TIFF (Unc ompres sed) dec ompres sor
QuickTime™ and a TIFF (Unc ompres sed) dec ompres sor are needed to see this pic ture.TIFF (Unc ompres sed) dec ompres sor
Quic kTime™ and a
TIFF (Uncompress ed) dec ompres sor
are needed to see this pic ture.
are needed to see this pic ture.
TIFF (Unc ompres sed) dec ompres sor
QuickTime™ and a are needed to s ee this pic ture.
TIFF (U ncompressed) decompressor
are needed to see this pic ture.
are needed to see t his picture.
NCRR
SCIRun/BioPSE Tutorial
BioPSE Examples
Introduction to SCIRun/BioPSE for new users
•Dataflow Programming
•SCIRun Architecture
•Common Modules
•Datatypes
NCRR
SCIRun/BioPSE Tutorial
BioPSE Examples
Introduction to SCIRun/BioPSE for new users
•Dataflow Programming
•SCIRun Architecture
•Common Modules
•Datatypes
Get the user comfortable
in the SCIRun/BioPSE
environment
NCRR
SCIRun/BioPSE Tutorial
BioPSE Examples
Illustrates practical application of SCIRun/BioPSE
• Solve the bioelectric finite
element forward problem
• Allow the user to visualize
the electric field
BioPSE Package
forward-fem.net
NCRR
Power Apps
BioPSE Examples
Problem specific applications
•Hide the complexities of dataflow
•Provide a simplified graphical
user interface
•Focus on a specific
task
NCRR
Power Apps
BioPSE Examples
Processing Pane
Guide the user through
specific processing steps
NCRR
Power Apps
BioPSE Examples
Visualization Pane
Provide different
visualization options
NCRR
BioFEM
BioPSE Examples
Encapsulation of the forward-fem network
• Change datasets
• Streamlines
• Isosurfaces
• Electrodes
http://software.sci.utah.edu/doc/User/Tutorials/BioFEM/BioFEM.html
NCRR
BioTensor
BioPSE Examples
Diffusion Tensor Imaging
Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options
•Planes
•Glyphs
•Isosurfaces
•Fibers
NCRR
BioTensor
BioPSE Examples
Diffusion Tensor Imaging
Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options
•Planes
•Glyphs
•Isosurfaces
•Fibers
NCRR
BioTensor
BioPSE Examples
Diffusion Tensor Imaging
Processing Steps
•Data Acquisition
•Registration
•Building Tensors
Visualization Options
•Planes
•Glyphs
•Isosurfaces
•Fibers
http://software.sci.utah.edu/doc/User/Tutorials/BioTensor/BioTensor.html
NCRR
Power App Benefits
Hides a large network
BioPSE Examples
NCRR
Power App Benefits
Simplifies the GUI
BioPSE Examples
NCRR