Table S1 p Value Fold Change Mean Expression Gene Symbol Gene Name Probe ID ANK2 AP3M2 ASCL2 BHLHE23 C16orf11 C16orf78 C20orf46 C20orf61 CACNA1A CASKIN2 CCDC120 CCDC13 CPXM1 CREB3L3 CTRC CTXN1 CYB561D1 CYP3A43 DKFZp434F142 DSP DUOX2 DUSP16 FIBIN FLJ44715 FLYWCH1 FUT11 GCM1 GFRA4 GHRHR GPR3 HMX1 KIAA0391 KIAA1430 KRTAP4-4 LOC440461 LOC441245 LOC646960 MAB21L2 MAPK8IP2 MEX3D MGC42157 MUC4 ODF4 OPRD1 OR4D2 PCSK1N PDZD11 PIGQ PRR17 PTPN5 PVR RAB26 SMR3A SP3 SYNGR1 TFF1 THADA TMEM191B TMPRSS2 UNC5C ZIC4 ZNF146 ZNF24 ZNF283 ankyrin 2, neuronal adaptor-related protein complex 3, mu 2 subunit achaete-scute complex homolog 2 (Drosophila) basic.

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Transcript Table S1 p Value Fold Change Mean Expression Gene Symbol Gene Name Probe ID ANK2 AP3M2 ASCL2 BHLHE23 C16orf11 C16orf78 C20orf46 C20orf61 CACNA1A CASKIN2 CCDC120 CCDC13 CPXM1 CREB3L3 CTRC CTXN1 CYB561D1 CYP3A43 DKFZp434F142 DSP DUOX2 DUSP16 FIBIN FLJ44715 FLYWCH1 FUT11 GCM1 GFRA4 GHRHR GPR3 HMX1 KIAA0391 KIAA1430 KRTAP4-4 LOC440461 LOC441245 LOC646960 MAB21L2 MAPK8IP2 MEX3D MGC42157 MUC4 ODF4 OPRD1 OR4D2 PCSK1N PDZD11 PIGQ PRR17 PTPN5 PVR RAB26 SMR3A SP3 SYNGR1 TFF1 THADA TMEM191B TMPRSS2 UNC5C ZIC4 ZNF146 ZNF24 ZNF283 ankyrin 2, neuronal adaptor-related protein complex 3, mu 2 subunit achaete-scute complex homolog 2 (Drosophila) basic.

Table S1
p Value Fold Change
Mean
Expression
Gene Symbol
Gene Name
Probe ID
ANK2
AP3M2
ASCL2
BHLHE23
C16orf11
C16orf78
C20orf46
C20orf61
CACNA1A
CASKIN2
CCDC120
CCDC13
CPXM1
CREB3L3
CTRC
CTXN1
CYB561D1
CYP3A43
DKFZp434F142
DSP
DUOX2
DUSP16
FIBIN
FLJ44715
FLYWCH1
FUT11
GCM1
GFRA4
GHRHR
GPR3
HMX1
KIAA0391
KIAA1430
KRTAP4-4
LOC440461
LOC441245
LOC646960
MAB21L2
MAPK8IP2
MEX3D
MGC42157
MUC4
ODF4
OPRD1
OR4D2
PCSK1N
PDZD11
PIGQ
PRR17
PTPN5
PVR
RAB26
SMR3A
SP3
SYNGR1
TFF1
THADA
TMEM191B
TMPRSS2
UNC5C
ZIC4
ZNF146
ZNF24
ZNF283
ankyrin 2, neuronal
adaptor-related protein complex 3, mu 2 subunit
achaete-scute complex homolog 2 (Drosophila)
basic helix-loop-helix family, member e23
chromosome 16 open reading frame 11
chromosome 16 open reading frame 78
chromosome 20 open reading frame 46
hypothetical LOC728450
calcium channel, voltage-dependent, P/Q type, alpha 1A
CASK interacting protein 2
coiled-coil domain containing 120
coiled-coil domain containing 13
carboxypeptidase X (M14 family), member 1
cAMP responsive element binding protein 3-like 3
chymotrypsin C (caldecrin)
cortexin 1
cytochrome b-561 domain containing 1
cytochrome P450, family 3, subfamily A, polypeptide 43
hypothetical protein DKFZp434F142
desmoplakin
dual oxidase 2
dual specificity phosphatase 16
fin bud initiation factor homolog (zebrafish)
FLJ44715 gene product
FLYWCH-type zinc finger 1
fucosyltransferase 11 (alpha (1,3) fucosyltransferase)
glial cells missing homolog 1 (Drosophila)
GDNF family receptor alpha 4
grow th hormone releasing hormone receptor
G protein-coupled receptor 3
H6 family homeobox 1
KIAA0391
KIAA1430
keratin associated protein 4-4
similar to Rho GTPase activating protein 15
hypothetical LOC441245
similar to hCG1818432
mab-21-like 2 (C. elegans)
mitogen-activated protein kinase 8 interacting protein 2
mex-3 homolog D (C. elegans)
hypothetical locus MGC42157
mucin 4, cell surface associated
outer dense fiber of sperm tails 4
opioid receptor, delta 1
olfactory receptor, family 4, subfamily D, member 2
proprotein convertase subtilisin/kexin type 1 inhibitor
PDZ domain containing 11
phosphatidylinositol glycan anchor biosynthesis, class Q
proline rich 17
protein tyrosine phosphatase, non-receptor type 5
poliovirus receptor
RAB26, member RAS oncogene family
submaxillary gland androgen regulated protein 3A
Sp3 transcription factor
synaptogyrin 1
trefoil factor 1
thyroid adenoma associated
transmembrane protein 191B
transmembrane protease, serine 2
unc-5 homolog C (C. elegans)
Zic family member 4
zinc finger protein 146
zinc finger protein 24
zinc finger protein 283
A_23_P133068
A_23_P170331
A_23_P105088
A_24_P57898
A_32_P78936
A_32_P221
A_23_P120504
A_24_P92106
A_24_P130559
A_24_P48187
A_24_P48983
A_23_P364597
A_23_P6066
A_24_P57207
A_23_P34852
A_32_P155016
A_24_P348885
A_23_P71258
A_24_P269327
A_32_P157945
A_24_P35905
A_24_P189739
A_23_P138885
A_24_P314962
A_23_P89018
A_23_P413788
A_32_P98732
A_24_P365496
A_24_P17048
A_23_P35000
A_23_P84320
A_24_P390315
A_24_P917164
A_23_P38603
A_24_P24856
A_24_P832309
A_24_P15182
A_24_P148907
A_23_P502078
A_24_P923765
A_24_P388703
A_24_P239183
A_23_P421526
A_23_P11752
A_23_P77797
A_23_P22487
A_23_P252491
A_24_P359205
A_24_P535483
A_24_P409519
A_23_P141894
A_23_P54709
A_23_P41365
A_24_P58283
A_23_P348063
A_24_P322771
A_24_P101786
A_24_P478495
A_23_P29067
A_23_P69617
A_24_P217306
A_24_P159845
A_24_P920188
A_23_P78922
0.0000
0.0001
0.0000
0.0000
0.0000
0.0000
0.0001
0.0000
0.0000
0.0000
0.0075
0.0000
0.0001
0.0000
0.0000
0.0000
0.0002
0.0012
0.0004
0.0405
0.0001
0.0000
0.0003
0.0000
0.0000
0.0001
0.0000
0.0000
0.0215
0.0002
0.0000
0.0000
0.0001
0.0074
0.0000
0.0000
0.0001
0.0309
0.0001
0.0000
0.0004
0.0005
0.0002
0.0002
0.0001
0.0001
0.0000
0.0000
0.0004
0.0000
0.0000
0.0000
0.0053
0.0000
0.0001
0.0011
0.0000
0.0001
0.0000
0.0010
0.0000
0.0002
0.0001
0.0000
17.1
2.3
2.3
2.1
4.0
2.9
2.3
2.2
2.2
7.2
2.1
3.4
2.0
2.5
2.9
2.1
4.1
3.1
2.5
2.4
3.1
5.2
2.2
7.2
10.2
2.2
2.7
8.5
2.2
2.1
2.3
2.2
2.7
2.0
2.1
4.0
2.4
2.2
2.0
2.0
3.2
3.0
2.2
2.2
2.3
2.3
4.4
2.7
3.0
2.2
2.8
2.2
2.2
2.6
2.2
2.2
2.3
2.9
3.3
2.3
3.3
2.5
2.4
6.8
147
98
31
17250
1068
30
45
121
89
777
1203
46
108
163
68
182
5443
984
445
53
44
969
37
97
4179
304
142
15750
1814
82
49
50
40
188
29974
186
927
131
46
81914
227
941
41
73
815
1159
2433
557
2211
35
36
94
4381
615
127
751
59
24141
142
37
31
39
1615
1392
GSTT1
GSTT1
KRTAP5-8
ODF3L2
PCSK6
PGM5
PTH2
glutathione S-transferase theta 1
glutathione S-transferase theta 1
keratin associated protein 5-8
outer dense fiber of sperm tails 3-like 2
proprotein convertase subtilisin/kexin type 6
phosphoglucomutase 5
parathyroid hormone 2
A_24_P319001
A_23_P254944
A_23_P47086
A_23_P316850
A_23_P390006
A_24_P120907
A_23_P357374
0.0083
0.0042
0.0259
0.0022
0.0031
0.0261
0.0034
0.4
0.2
0.5
0.5
0.5
0.4
0.4
32
99
1587
230
53
38
331
Table S1: Detailed inform ation on know n genes w ith differential expression betw een the tw o patient groups: The exact microarray
location of each gene is indicated by the Probe ID. The P value indicates the level of significance after correction for multiple testing according to
Benjamini and Hochberg. Fold Change indicates expression ratio of stable to progressive disease; Mean Expression is calculated over all 32
patients.