Transcript Supplemental Table 1: Real-time PCR primer sequences Ki67 Supplementary Figure 1 Fleming et al.

Supplemental Table 1: Real-time PCR primer sequences
Ki67
Supplementary Figure 1
Fleming et al. 2009
A
Control
Proliferative
index
AA CAU
B
AA
CAU
% necrosis
AA CAU
AA
CAU
Supplementary Figure 2
Fleming et al. 2009
A
AA
fibroblasts
B
CAU fibroblasts
AA CAU fibroblasts
fibroblasts
4.0
4.0
4.0
4.0
2.0
2.0
2.0
2.0
0.0
0.0
0.0
0.0
Source of ECM
Supplementary Figure 3
Fleming et al. 2009
African American Caucasian American
MDA-MB-231
SUM159
MCF10Ca1h
T47D
MCF7
BT474
ZR75-1
Supplementary Figure 4
Fleming et al. 2009
Hornerin
Wnt10a
R.GPYESGSGHSSGLGHR.E
50
y7
+1
y11
y13+2
y4+1
y3+1
y2
+1
b3+1
0
b9
+2
y14
y6+1
B
+1
y12+1
+1
400
b10+1
y5+1
600
800
y12+2
b12
y15+3
+1
+1
b11 b12
1000
b13+1
b14+1
1200
+1
y14
b3+1
0
1400
b9
+2
b19
+2
b17
b14
b13+1
b6+2
+3
y2
200
Vimentin
100
y6+1
D
y23+2
+1
b15+1
400
600
800
y8+1
50
y4+1
b3+1
y1+1
0
b2+1
200
y3+1
b5+1
y5+1
b8+2
300
400
y9+1
50
y2+1
y10+2
y11+2
y5
y9
+2
500
m/z
600
y7+1
b7+1
700
b9+1
b8+1
800
900
b11+1
b6+1
y12+2
b5+1
+1
b4+1
b6+1
1200
y8+1
R.DYSHYYTTIQDLR.D
b4+1
y2+1
1000
m/z
Cytokeratin 19
100
Relative Abundance
Relative Abundance
K.FADLSEAANR.N
+2
y22
+2
b23
+2
m/z
C
+2
b20
y16+2
+2
b14+3
y4+2
+2
y19
y18+2
b21+3
b16+3
50
b15+1
y13+1
y12+2
b4+1
+2
b21
b13+2
y9+2
y9+1 y10+1
y8+1
R.NGGQLEPGPAGAPSPAPGAPGPRR.R
100
Relative Abundance
100
Relative Abundance
A
b9+1
y6+1
b8+1
y4+1
y9+1
0
y3+1
y9+2
400
600
b7+1
800
m/z
1000
b10+1
1200
y10+1
y11+1
1400
b12+1
Supplementary Figure 5A
Fleming et al. 2009
African-American Network 2
Supplementary Figure 5B
Fleming et al. 2009
African-American Network 3
Supplementary Figure 5C
Fleming et al. 2009
African-American Network 4
Supplementary Figure 5D
Fleming et al. 2009
African-American Network 5
Supplementary Figure 6A
Fleming et al. 2009
Caucasian-American Network 2
Supplementary Figure 6B
Fleming et al. 2009
Caucasian-American Network 3
Supplementary Figure 6C
Fleming et al. 2009
Caucasian-American Network 4
Supplementary Figure 6D
Fleming et al. 2009
Caucasian-American Network 5