NSU HPD NLM Update based on presentations Originally Presented at the MLA Annual Meeting May 2007 by NLM David Gillikin, Online Update Joyce Backus, MedlinePlus Maria Collins,
Download ReportTranscript NSU HPD NLM Update based on presentations Originally Presented at the MLA Annual Meeting May 2007 by NLM David Gillikin, Online Update Joyce Backus, MedlinePlus Maria Collins,
Slide 1
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 2
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 3
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 4
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 5
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 6
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 7
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 8
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 9
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 10
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 11
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 12
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 13
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 14
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 15
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 16
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 17
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 18
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 19
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 20
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 21
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 22
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 23
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 24
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 25
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 26
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 27
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 28
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 29
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 30
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 31
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 32
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 33
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 34
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 35
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 36
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 37
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 38
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 39
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 40
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 41
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 42
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 2
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 3
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 4
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 5
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 6
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 7
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 8
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 9
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 10
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 11
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 12
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 13
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 14
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 15
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 16
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 17
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 18
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 19
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 20
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 21
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 22
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 23
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 24
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 25
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 26
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 27
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 28
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 29
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 30
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 31
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 32
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 33
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 34
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 35
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 36
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 37
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 38
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 39
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 40
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 41
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd
Slide 42
NSU HPD NLM Update
based on presentations Originally Presented at
the MLA Annual Meeting
May 2007
by NLM
David Gillikin, Online Update
Joyce Backus, MedlinePlus
Maria Collins, DOCLINE
Modified and updated by Todd J. Puccio
August 24, 2007
PubMed / Medline Indexing
► FY2006
629,000 indexed citations added to MEDLINE.
Highest ever indexing rate (last year was 606,596
indexed citations).
46,918 gene indexing links created (4% increase
from last year).
► FY2007
175,177 citations indexed in during the 2nd quarter,
at a rate of over 700,000 articles per year.
More than 85% of MEDLINE citations now supplied
electronically by publishers.
Indexing
► Electronic
Journal Indexing
120 online-only journals indexed for
MEDLINE, an increase from 107 a year ago.
276 additional journals - the online version is
indexed instead of the print version.
Bioethics Information Resources
► Web
resource developed to provide
additional support to the subject of
bioethics.
► www.nlm.nih.gov/bsd/bioethics.html
► Main links on:
PubMed Special Queries page.
List of NLM Databases and Resources on the
NLM Home page.
OLDMEDLINE
► Mapping
OLDMEDLINE Keywords to
current MeSH:
76% of citations mapped completely (over
1.34 million citations).
These completed records are now converted
to the status [PubMed – Indexed for
MEDLINE].
Work continues on mapping the additional
keywords.
► Conversion
of the citations from the 1949
Current List of Medical Literature (CLML)
has begun.
PubMed
► PubMed
– surpassed 17 million records
► MEDLINE – over 15.8 million (93%)
► In Process records – over 252,000 (1.5%)
► OLDMEDLINE – over 420,000 (2.5%)
► PubMed-only records – over 524,000 (3%)
PubMed Enhancements
► New
version of the Entrez system being
developed.
► Beta version made available for review this
spring.
► New system to be coming online soon.
► Foundation for the next generation of
features and capabilities on Entrez
databases, including PubMed.
PubMed Enhancements
► AbstractPlus
view
New default view
Single citation display – customizable selection using
My NCBI
Library icons
►New system version displays a single library icon in
upper right hand corner – different size (100 pixels
x 25 pixels)
►If users activate more than one icon, the icon
displayed at the top will be selected according to
the following priority:
Library LinkOut full text icon
Library LinkOut print icon
Outside Tool icon
AbstractPlus
PMC Scanning Project
► Journal
Back Issues loaded to PubMed.
39 Completed Journals and growing.
70,231 total citations added.
From journals such as PNAS, Plant Physiology,
Journal of Physiology, Journal of Clinical
Pathology, and Journal of Anatomy
► Next
step, adding abstracts found in PMC
citations not found in PubMed Citations.
PMC Scanning Project
► From
the 38 completed PMC back issue
scanned titles:
40,640 new abstracts added from 23 titles.
15 titles did not have new abstracts to add.
► Process
now part of standard workflow for
PMC scanned citations to be included in
MEDLINE/PubMed.
rd
3
Party Back Issue Citations
► Publisher
data.
► Goal:
requests to include their retrospective
Load citations for journal issues not previously
included in MEDLINE/PubMed.
New citations published from 1966 and up will be put
into MEDLINE format.
These citations will not be indexed with MeSH.
Also, add abstracts from Publisher citations that are
not found in MEDLINE citations.
► Slow
process, dependent upon QA testing and
review.
NCBI / Genetic Alliance Web
Resource
► New
Web site feature on
www.geneticalliance.org site.
► Accessed through the “Disease InfoSearch”
feature.
► Designed to help patients, care givers, and
health professionals easily locate & navigate
information on genetic disorders.
NCBI / Genetic Alliance Web
Resource
Training
►
NLM Theater
http://www.nlm.nih.gov/pubs/techbull/mj07/mj07_mla_theater_ppt.html
Over 14 NLM products and services are being discussed and
demonstrated.
Experimenting with recording the theater presentations with
Adobe Connect, and posting them on the NLM Web site
along with the PowerPoint slides.
►
Working with NTCC to develop live online clinics on
using NLM products and services
Beginning in August – brief session on searching for
chemicals and drugs in PubMed
DailyMed
► http://dailymed.nlm.nih.gov/
► Provides
high quality information about
marketed drugs.
► Includes FDA approved labels (package
inserts).
► 2,629 approved prescription drugs included
in the database.
Specialized Information Services (SIS)
► TOXLINE
Unified
- Search results from TOXLINE Core &
TOXLINE Special merged. Subset of Medline
► TOXNET http://toxnet.nlm.nih.gov/ including Household ProductDatabase
► TOX MAP:
Enhanced, more accurate map presentations.
Improved location data using enhanced data from EPA.
Includes 2005 Toxics Release Inventory (TRI) data.
► ToxMystery launched – interactive learning site for 7–10
year olds.
► ToxTown – Toxicology learning resource for children
► WISER 2.3 Hazardous material resource for First
Responders.
► ToxSeek
updated with an enhanced
meta-search engine and clustering tool.
http://toxseek.nlm.nih.gov/
Specialized Information Services (SIS)
► Genetics
► OMIM
Home Reference
http://ghr.nlm.nih.gov/
(Online Mendelian Inheritance in Man)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
► ChemIDPlus
http://chem2.sis.nlm.nih.gov/chemidplus/chemidlite.jsp
► List of NLM
Databases and Resources
MedlinePlus Update
► Where
in the world is MedlinePlus?
► What’s new? – health topic pages
► NIHSeniorHealth - new topics and videos
► What’s coming? – RSS and search
Health topics:
MedlinePlus Today
740 English (19,000 links)
Interactive tutorials: 175
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Links to
ClinicalTrials.gov
776
NIHSeniorhealth:
31 topics
Encyclopedia:
approx 3700
articles; 2300
images
Surgeries:
148 videos
Dictionary
One weekly
podcast
Health news:
Approx 15-20
stories per day
Directories: Over 100
directories of doctors,
hospitals, clinics and libraries.
Magazine:
4 issues
GoLocal: 21 sites
Email lists: 11 daily
& weekly
Health topics:
MedlinePlus en español
740 English (19,000 links)
704 Spanish (5,500 links)
Drug database and
herbals &
supplements
database: approx
1000 monographs
Encyclopedia:
approx 3700
articles; 2300
images
Interactive
tutorials: 175
Health news:
Approx 15-20
stories per day
Surgeries
Email lists:
daily & weekly
Health Topics Homepage – 1998
Health topics page - 1999
Health topics page - 2001
Health topic page – 2000
Health topic page - 2001
• Long
list of links with
lots of scrolling
• Another click to get
to “real” information
• Lots of words and
links but no pictures
and little white space
NIHSeniorHealth Update
► Flash
Video
► New topics
► New home page
New banner
Status bar indicates
total length of video
and current progress
Slider for fast
forwarding
and rewinding
Volume slider
Closes the
video window
Play starts and
pauses the video
Restarts video from
the beginning
Transcript opens the captioning
text in a separate window
New Topics (Since May 2006)
► Five
new topics (32 total):
Heart Attack (NHLBI)
Paget's Disease of Bone
(NIAMS)
High Blood Pressure (NHLBI)
Falls and Older Adults (NIA)
Depression (NIMH)
Skin Cancer (NCI)
NIHSeniorHealth Homepage
or
RSS feeds & PodCasts
► NIH
Radio
http://www.nih.gov/news/radio/index.htm
► NIH
PodCasts
http://www.nih.gov/news/radio/nihpodcast.
htm
► NLM
RSS feeds & PodCasts
RSS & Podcasts
http://www.nlm.nih.gov/listserv/rss_podcasts.html
► MedlinePlus:
NLM Director's Comments
podcast
RSS feeds & PodCasts
NLM Databases
► NLM
Databases & Electronic Resources :
Complete List http://www.nlm.nih.gov/databases/
► NLM
Gateway
Combined Federated Search of the NLM
Databases
http://gateway.nlm.nih.gov/gw/Cmd