Transcript Project - Bioinformatics

Project
Create an analysis pipeline using Perl to answer
a biological question
2 weeks
Small teams of ~4 students
One report and presention per student
Saman Amini
Wei Chen
Giorgio Tamo
Barsha Poudel
Mushta Rehman
Leila Sharifzadeh Dehkordi
Kamlesh Sahu
Patricia de Lely
Heleen de Weerd
Dennis Versluis
Berry Kriesels
Yanick Hagemeijer
RNA Editing
Teams
Structural Variation
Xiaoxue Sun
Peter Venhuizen
Ioannis Moustakas
Robert Ernst
Dirk van Vugt
Jitske van der Laan
Joel Klein
Tao Xiang
Cizar Almalak
Tristan de Jong
Luigi Faino
Dunya Cleijne
Agenda
Daily consultation hours: 3pm - 5pm
(or questions per mail)
Plan presentation: Tuesday February 28 at 3pm
presentation: 5-10 min/group, also include task division
Progress report: Friday March 2 at 1 pm
Final presentation: Friday March 9
Schedule
10.30
11.00-12.30
13.30
14.00-15.30
16.00-17.30
start (upload presentations etc.)
presentations 30 min per group
start (upload presentations etc.)
presentations 30 min per group
drinks
30 min per group: 5 min/student + 10 min discussion
We will be strict about the time schedule, so make sure
to keep your talk to 5 minutes.
Report
deadline: Monday March 12, 23h59
The INDIVIDUAL final report should be about the
COMPLETE project that your group worked on,
with emphasis on the part that you contributed.
Use a normal publication structure with:
introduction, methods, results and discussion
sections (include literature references).
Each group member will be
responsible (‘owner’) of his/her own
part of the solution, and that part of
the software will be taken into
account for the grading (with the
final report and presentation).
Report
You will be graded individually, not as a group: so
we should be able to see what you contributed.
Include a section at the end of your report that
describes everyone’s contribution to the project,
who did what.
Include the Perl code as an appendix with the
author(s) listed.
Remember, keep things as simple as possible, there
will be no extra credits for unnecessary complexity.
And if you have not yet done so, please fill out the:
Online survey BIF30806 Advanced Bioinformatics