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Lecture 2. Classification of Living things. Prokaryotes, Eukaryotes, Viruses Myandina Galina Ivanovna, Ph.D., Dr. Sc., professor 20.07.2015 Taxonomy is the science of identifying, classifying and naming organisms The Diversity of Living Systems The bases of scientific classification • structural similarity and morphological features • cellular organization • biochemical similarity is based on comparing of the proteins and DNA structure. • genetic similarity • embryological evidence Binomial nomenclature • K. Linnaeus separated living things first into very large groups called kingdoms, • next he divided each kingdom into phyla (phylum), • and each phylum is divided into classes. • A class contains many orders. • A division of order is a family. • A family contains related genera. • A genus is composed one or more species. Classification of man • • • • • • • • The Kingdom: Animalia (includes all animals) The Phylum: Chordata (have back bones) The Subphylum: Vertebrata The Class: Mammalia (the animals having mammary glands) The Order: Primates The Family: Hominidae The Genus: Homo The Species: Sapiens Taxonomy is the science of identifying, classifying and naming organisms • The taxonomy is able to infer the evolutionary relationships among species Phylogenetic tree • phylogenetic tree is a visual model of the inferred evolutionary relationships among organisms All the living things are divided in two groups: • Prokaryota (Eubacteria, Arhaebacteria) • Eukaryota (Protista, Planatae, Animalia and Fungi) Kingdom Protista (the protozoa) • Phylum Sarcomasyigophora • Phylum Apicomplexa • Phylum Ciliophora (the ciliates) Kingdom Animalia • Phylum Plathelminthes • Phylum Nemathelminthes • Phylum Arthropoda Five-kingdom system Kingdom Cell type Cell number Major mode of nutrition Assimilation’s characteristics Monera Prokaryotic Unicellular Absorb or photosynthesiz e Autotrophic or heterotrophic Protista Eukaryotic Unicellular Absorb, ingest or photosynthesiz e Autotrophic or heterotrophic Plantae Eukaryotic Multicellular Photosynthesiz e Only autotrophic Fungi Eukaryotic Most multicellular Absorb Heterotrophic Animalia Eukaryotic Multicellular Ingest Heterotrophic Comparing viruses and cells Characteristics Virus Cell Structural parts . Protein capsid, nucleic acid core Genetic material DNA or RNA Reproduction Requires a host cell By mitosis and meiosis Crystallization Yes No Nucleus, cytoplasm, organelles, membrane only DNA INTESTINAL AND UROGENITAL PROTOZOA Phylum Sarcomasyigophora (the protozoa) • Subphylum Sarcodina (the amoebae) • Entamoeba histolytica (amoebiasis, amoebic dysentery) • Subphylum Mastigophora (the flagellates) • Class Zoomastigophora • Trichomonas vaginalis (trichomoniasis) • Trichomonas intestinalis hominis • Giardia lamblia (giardiasis, lamblios) • Order Kinetoplastida • Trypanosoma brucei gambiense • Trypanosoma brucei rhodesiense (African trypanosomiasis) • Trypanosoma cruzi (Chagas’ disease) • • • Leishmania tropica (cutaniosis leishmaniasis) Leishmania donovani (visceral leishmaniasis) Leishmania brasiliensis (mucocutaniosis leishmaniasis) The protozoa, cont. Phylum Apicomplexa Class Sporozoea • Plasmodium spp. (malaria) • Toxoplasma gondii (toxoplasmosis) Phylum Ciliophora (the ciliates) • Class Litostomatea • Balantidium coli (balantidiasis) Phylum Sarcomasyigophora (the protozoa) Entamoeba histolytica Leishmania tropica Giardia lamblia Trypanosoma brucei gambiense Intestinal and luminal protozoa significant to human health include • Entamoeba histolytica (Amebae) • Balantidium coli (Ciliates) • Giardia lamblia and Trichomonas vaginalis (Flagellates) TEACHING OBJECTIVES • Epidemiology, morbidity and mortality Morphology of the organism Life cycle, hosts and vectors Disease, symptoms, pathogenesis and site Diagnosis Prevention and control AMEBIASIS (amebic dysentery, amebic hepatitis) • 0.5 to 50% of the population world wide harbors Entamoeba histolytica causes amebic dysentery • Humans are the principal host • Infection is associated with poor hygiene • Amebic dysentery is spread by fecal contamination of food and water Trophozoites of Entamoeba histolytica • The trophozoites (forma magna) are elongated (up to 60 µm in length), they tend to be in diarrheal stool • Two diagnostic characteristics are seen here: the nuclei show a centrally placed karyosome with a uniformly distributed peripheral chromatin • Life cycle of Entamoeba histolytica Symptoms • Acute: Frequent dysentery with necrotic mucosa and abdominal pain • Trophozoites are found in stool • Chronic: Recurrent episodes of dysentery with blood and mucus in the feces • Cysts are found in the stool • The organism may invade the liver, lung and brain where it produces abscesses that result in liver dysfunction, pneumonitis, and encephalitis Diagnosis • Symptoms, history and epidemiology are the keys to diagnosis • In the laboratory: finding cysts in the stool GIARDIASIS (lambliasis) • Giardia lamblia (a flagellate) is the most common cause of water-borne disease • It is associated with: • breakdown of water purification systems, • drinking from contaminated streams, • travel to endemic areas (Russia, India, Rocky Mountains, etc.) and day care centers Morphology • Trophozoite: Giardia is a half pear-shaped organism with 8 flagella and 2 axostyles arranged in a bilateral symmetry. • There are two anteriorly located large suction discs. • The cytoplasm contains two nuclei and two parabasal bodies • Cyst: Giardia cysts are ellipsoidal cells with a smooth well-defined wall. The cytoplasm contains four nuclei and many of the structures seen in the trophozoite Life cycle • Infection occurs by ingestion of cysts, • trophozoites colonize the upper small intestine • The cysts are passed in the stool • Man is the primary host Symptoms • abdominal distension • nausea and foul-smelling bulky, explosive, often watery, diarrhea • The stool contains excessive lipids • The more chronic stage is associated with vitamin B12 malabsorption • malabsorption of nutrients Diagnosis • Giardia caused dysentery is distinct from other dysenteries due to lack of mucus and blood in the stool • lack of high fever • Cysts in the stool and trophs in the duodenum can be identified microscopically Balantidium coli • This is a parasite primarily of cows, pigs and horses. The organism is a large ciliate with a macro- and a micro-nucleus The infection occurs mostly in farm workers and other rural dwellers by ingestion of cysts in fecal material of farm animals. • Cysts are the parasite stage responsible for transmission of balantidiasis The host acquires the cyst through ingestion of contaminated food or water excystation occurs in the small intestine, and the trophozoites colonize the large intestine • • Balantidium coli • zoonotic protozoan intestinal infections with some health significance • Cysts are the parasite stage responsible for transmission of balantidiasis • The host most often acquires the cyst through ingestion of contaminated food or water Following ingestion, excystation occurs in the small intestine, and the trophozoites colonize the large intestine . The trophozoites reside in the lumen of the large intestine of humans and animals, where they replicate by binary fission, during which conjugation may occur . Trophozoites undergo encystation to produce infective cysts . Some trophozoites invade the wall of the colon and multiply. Some return to lumen and disintegrate. Mature cysts are passed with feces • Symptoms and pathogenesis of balantidiasis are similar to those seen in entamebiasis • liver, lung and brain abscesses are not seen • Diagnosis: • Detection the cyst in stool TRICHOMONIASIS • T. vaginalis colonizes the vagina of women and the urethra of men. • Infection occurs primarily via sexual contact, nonvenereal infections are possible. • The organism does not encyst and divides by binary fission. • There is no non-human reservoir Symptoms • The organism causes contact-dependent damage to the epithelium of the infected organ Diagnosis • Clinical suspicion may be confirmed by finding the organism in stained smears of vaginal discharge Summary Organism Entameba histolytica Giardia lamblia Balantidium coli Trichomonas vaginalis Transmission Oro-fecal Symptoms Dysentery with blood and necrotic tissue. Chronic: abscesses Diagnosis Treatment Stool: cysts with 1- GI: Iodoquinol or 4 nuclei and/or Metronidazole trophs. Abscess: Metronidazole Trophs in aspirate. Oro-fecal Fowl-smelling, bulky diarrhea; blood or necrotic tissue rare. Stool: typical old man giardia troph and/or cyst. Iodoquinol or Metronidazole. Oro-fecal; zoonotic Dysentery with blood and necrotic tissue but no abscesses. Stool: ciliated trophs and/or cysts. Iodoquinol or Metronidazole. Sexual Vaginitis; occasional urethritis/pros tatitis. Flagellate in vaginal (or urethral) smear. Mebendazole; vingar douche; steroids