Transcript Detection of Single Ring Stage P. falciparum in Human Thin
Detection of Single Ring Stage P. falciparum in Human Thin Film Blood Smears Using FTIR Microspectroscopy and Differentiation of Plasmodium Positive from Plasmodium Negative Red Blood Cells
by McKale Santin, Dr. Bryan Holmes, Dr. Adam Hunt, and Kenneth A. Puzey of QuantaSpec, Inc. Contact: [email protected]
ABSTRACT
Currently, rapid diagnostic tests for malaria infection perform poorly at low parasite loads, are degraded by severe temperatures, and contain reagents, which contribute to their costs. The overall objective of this study was to perform a preliminary evaluation of the utility of FTIR microspectroscopy for
in vitro
diagnosis of thin film blood smears for malaria infection. FTIR microspectroscopy has potential advantages in detecting low parasite loads, is not affected by temperature, and does not require any reagents. Giemsa-stained thin film blood smear slides were analyzed in this study. 240 slides with ring stage
P. falciparum
infected human blood were prepared from culture.
P. falciparum
negative controls included 80 clinical
P. vivax
slides (collected and verified by expert microscopy (EM), 40 slides with
Salmonella-
infected human blood (prepared from culture), and 40 uninfected human blood slides. Infrared spectra were measured from a small area of each slide (~13 microns x 13 microns) usually containing only one red blood cell. Algorithms were written to differentiate
Plasmodium
positive spectra from
Plasmodia
negative spectra and tested by cross-validation. The sensitivity was 98.8% to 100% and the specificity was 95.4% to 100% for
Plasmodia
positive samples with a 95% confidence interval. These results suggest that further study of FTIR spectroscopy as an automated reagent-less diagnostic method with potential for detection of single parasites is warranted. Infrared spectroscopy could radically lower marginal test costs by eliminating the need for expensive consumables.
Spectra collected from a 13x13
m area of a sing-cell layer of each thin film smear (1-3 RBCs). Mid-IR spectra collected from 4000cm
-1
to 600cm
-1
at a spectral resolution of 2cm
-1
. 100 scans/measurement. Background measurements taken from an adjacent, blank 13x13
m area of each slide, interactively subtracted from sample spectra using Opus 6.5 software.
Data Processing.
Raw spectral data organized into two classification groups based on sample identity:
Plasmodium
-positive and
Plasmodium
-negative. Data imported into Excel
, 1
st
derivative calculated by taking the slope of the raw data. 1
st
derivative data imported into JMP
software and multivariate discriminant analysis performed on all spectra. Mahalanobis distances calculated for each classification group for each replicate.
Algorithm Development.
Identification algorithm developed to determine
Plasmodium
spp. infection based on processed IR spectra. The algorithm consists of a set of vectors that are multiplied with the first derivative spectra of an unknown sample to be identified. For algorithm development, the full set of absorbance values (all optical frequencies) is replaced by a much smaller subset of data containing 350 key optical frequencies for identification.
Figure 3. Visual Images, 740X magnification.
Ring-stage
P. falciparum
infected red blood cells (left, red arrow) and uninfected red blood cells (right). Each sample was visually located, then the microscope was switched to IR mode to collect reflectance-absorbance spectra from the center square.
INTRODUCTION
Malarial infection is a major global health problem. A key part of malaria control strategies is early case detection with
in vitro
diagnostics. The current gold standard for malaria diagnosis is expert microscopy of Giemsa-stained blood smears, however this method has many limitations. It is labor intensive, requires consistent, quality staining, and requires diagnosis by a trained, expert microscopist, which are in short supply. Furthermore, most malaria patients are treated in peripheral healthcare facilities that do not have access to quality microscopy. Simple rapid diagnostic tests (RDTs) based on detection of parasite antigens have been introduced to try and provide an alternative to diagnosis with microscopy, yet these diagnostics also have many limitations. RDTs are poor at detecting low-level parasitemia, have a limited shelf life, and contain reagents, which contribute to their cost. Our present study investigates the feasibility of using infrared (IR) microspectroscopy as an alternative diagnostic approach that can overcome the limitations inherent to diagnosis based on analysis of a visible image or by reagent-based assays. Fourier Transform Infrared (FTIR) microspectroscopy can probe the entire chemistry of an intact biological cell with IR light instead of reagents. The spectral signatures of biological cells vary depending on the molecular components of the cell, and the chemical alterations that accompany infection provide the basis for this detection technology. The goal of this research was to evaluate FTIR microspectroscopy for automatically differentiating
Plasmodium
-positive from
Plasmodium-
negative red blood cells in thin film blood smears.
Figure 4. Absorbance Spectra.
40 absorbance spectra from
P. falciparum
strain 3D7 infected blood (left) and 40 absorbance spectra from uninfected human blood (right).
Species/Strain P. falciparum 7G8 P. falciparum D6 P. falciparum 3D7 P. falciparum 1776 P. falciparum HB3 P. falciparum Dd2 P. vivax, clinical Salmonella SL1344 Uninfected blood Control Type + + + + + + + Parasitemia 6.75% 5.08% 10.4-12.3% 5.8-6.5% 7.3-7.7% 5.7% Variable 5 bacteria : 1 RBC N/A # of Replicates 40 40 40 40 40 40 40 40 40 Table 1. Sample Characterization
.
Plasmodium
-positive controls contained
P. falciparum
and
P. vivax
infected human blood.
Plasmodium
negative controls contained
Salmonella
-infected human blood and uninfected human blood.
MATERIALS and METHODS
Positive and Negative Controls.
Uninfected negative controls: human blood, 5% Hematocrit.
Salmonella
-infected negative controls: uninfected human blood spiked with
Salmonella
SL1344.
P. falciparum
: uninfected blood spiked with strains 7G8, D6 (MR4) and 3D7,1776, HB3, Dd2 (NYU School of Medicine).
P. vivax
samples were prepared
ocular
from clinical cases in India Parasite and bacterial counts can be found in Table 1.
Sample Preparation.
40 thin film blood smears prepared per control group (Table 1). All samples prepared on low-e microscope slides (transparent in the visible region but highly reflective in the IR). Samples were fixed and stained with a 10% Giemsa solution.
Spectral Data Collection.
A Bruker Hyperion 1000 infrared microscope and a Bruker Tensor 27 FTIR spectrometer were used to collect the spectral data (Figures 1 & 2). This system uses a glowbar IR source and a MCT detector. The microscope was modified with a high power reflective objective for an overall magnification of 740X.
aperture 74x objective sample MCT detector detector 2 Figure 1. Hyperion 1000 optical beam path.
IR in Figure 2. Bruker Hyperion 1000 IR microscope and Tensor 27 FTIR spectrometer.
RESULTS
Visual images of uninfected and ring-stage
P. falciparum
infected red blood cells at 740X magnification are shown in Figure 3. Spectra were taken from the center square; all other IR light was blocked off by perpendicular apertures. Spectra in the mid-IR region of
Plasmodium
-positive (
P. falciparum
strain 3D7) and
Plasmodium
-negative (uninfected blood) are shown in Figure 4. From the computed Mahalanobis distances, it was found that the longest within-group distances were small (~10 3 ) when compared to the shortest across-group distances (~10 12 ). Cross validation testing was used to evaluate the accuracy of the developed algorithm for
Plasmodium
spp. detection. The algorithm correctly identified 280 out of 280 true positives and 80 out of 80 true negatives.
The sensitivity of the developed algorithm was 98.8-100% (95%CI) and the specificity was 95.4-100% (95%CI).
CONCLUSION
Initial results indicate FTIR microspectroscopy can be used as a rapid identification tool for the detection of
Plasmodia
in human thin film blood smears with high sensitivity and specificity. All 320 replicates were correctly identified as either malaria positive (240) or malaria negative (80), supporting the hypothesis that FTIR microspectroscopy can be used to detect ring-stage
P. falciparum
infection. This research study has also demonstrated the potential for infrared microspectroscopy to detect low level parasitemia, as single parasites were detected. We are currently working on collecting a larger clinical sample set, and increasing the number of red blood cells that can be diagnosed simultaneously.
ACKNOWLEDGEMENTS
This work is supported by the U.S Army Medical Research and Materiel Command under contract No.W81XWH 09-C-0019. The views, opinions and/or findings contained in this report are those of the authors and should not be construed as an official Department of the Army position, policy or decision unless so designated by other documentation.
“In the conduct of research where humans are the subjects, the investigator(s) adhered to the policies regarding the protection of human subjects as prescribed by Code of Federal Regulations (CFR) Title 45, Volume 1, Part 46; Title 32, Chapter 1, Part 219; and Title 21, Chapter 1, Part 50 (Protection of Human Subjects).”
Automated Reagent-less Differentiation of P. falciparum from P. vivax in Human Thin Film Blood Smears With FTIR Microspectroscopy
by Kenneth A. Puzey, Dr. Bryan Holmes, Dr. Adam Hunt, and McKale Santin of QuantaSpec, Inc. Contact: [email protected]
In malaria cases species of infection affects course of treatment. Differentiation of
P. falciparum
from
P. vivax
by RDTs requires multiple antibodies, which increases test costs. Furthermore, RDTs are subject to reader error. Speciation by visual microscopy is dependent on the skill and availability of an expert microscopist. The objective of this study was to evaluate the utility of FTIR microspectroscopy for automatic reagent-less differentiation of
P. falciparum
from
P. vivax
infected human red blood cells. Geimsa-stained thin film blood smear slides were analyzed in this study. For
P. falciparum
positive controls, 240 slides with ring stage
P. falciparum
were prepared from culture. For
P. vivax
positive controls, 40 clinical
P. vivax
slides were collected and verified by expert microscopy (EM). For negative controls, 40 slides with
Salmonella-
infected blood (prepared from culture) and 40 uninfected blood slides were prepared. Infrared spectra were measured from a small area of each slide (~13 microns x13 microns) typically containing only one red blood cell. Algorithms were written to differentiate red blood cells infected with
P. falciparum
, red blood cells infected with
P. vivax
, red blood cells infected with
Salmonella
and uninfected red blood cells based on their infrared spectra. Algorithms were tested by cross-validation. For
P. falciparum
sensitivity was 98.4 to 100% and specificity was 97.7% to 100% (95% CI). For
P. vivax
the sensitivity was 95.4% to 100% and the specificity was 98.8% to 100% (95% CI). These results suggest that FTIR spectroscopy may be useful for automated reagent-less differentiation of malaria infection. In high throughput settings spectroscopy testing may be lower cost because it does not require consumables.
INTRODUCTION
Over 3 billion people worldwide are at risk of malaria, representing almost half of the world’s population. Prompt and correct diagnosis of malarial infection is a primary part of malaria control and is essential for saving patient lives. In regions where both
Plasmodium falciparum
and
Plasmodium vivax
are present, effective diagnosis requires not only detecting malaria infection but also determining the species of infection, as different species respond to different chemotherapeutic treatments. Expert microscopy remains the gold standard for distinguishing different species of malarial infection, but unfortunately high-quality expert microscopy is difficult to maintain in resource-poor settings where the majority of malaria diagnosis is being performed. Rapid diagnostic tests (RDTs) based on detection of species-specific antigens such as pLDH (parasite lactate dehydrogenase) have been introduced to provide an alternative to diagnosis with microscopy. However, RDTs have many limitations. They are poor at detecting low-level parasitemia, have a limited shelf life, and contain reagents, which contribute to their cost. Our present study investigates the feasibility of using infrared (IR) microspectroscopy as an alternative diagnostic approach that can overcome the limitations inherent to diagnosis based on analysis of a visible image or by reagent-based assays. Fourier Transform Infrared (FTIR) microspectroscopy can probe the entire chemistry of an intact biological cell with IR light instead of reagents. The spectral signatures of biological cells vary depending on the molecular components of the cell, and the chemical alterations that accompany infection provide the basis for this detection technology. The goal of this research was to evaluate FTIR microspectroscopy for automatically differentiating
Plasmodium falciparum
from
Plasmodium vivax
infected red blood cells in thin- film human blood smears.
Ocular
Camera
MCT detector
ABSTRACT MATERIALS and METHODS
Positive and Negative Controls.
Uninfected negative controls: human blood, 5% Hematocrit.
Salmonella
-infected negative controls: uninfected blood spiked with
Salmonella
SL1344.
P. falciparum
: uninfected blood spiked with strains 7G8, D6 (MR4) and 3D7,1776, HB3, Dd2 (NYU School of Medicine).
P. vivax
samples were prepared from clinical cases in India.
Sample Preparation.
40 thin film blood smears prepared per control group. All samples prepared on low-e microscope slides (transparent in the visible region but highly reflective in the IR). Samples were fixed and stained with a 10% Giemsa solution.
Spectral Data Collection.
A Bruker Hyperion 1000 infrared microscope and a Bruker Tensor 27 FTIR spectrometer were used to collect the spectral data (Figures 1 & 2). This system uses a glowbar IR source and a liquid nitrogen-cooled MCT detector. The microscope was modified with a high power reflective objective for an overall magnification of 740X. Spectra collected from a 13x13 m area of a sing-cell layer of each thin film smear (1-3 RBCs). Mid-IR spectra collected from 4000cm -1 to 600cm -1 at a spectral resolution of 2cm -1 . 100 scans/measurement. Background measurements taken from an adjacent, blank 13x13 m area of each slide, interactively subtracted from sample spectra using Opus 6.5 software.
Data Processing.
Raw spectral data organized into 3 classification groups based on the identity of the spectral sample:
P. falciparum-
positive,
P.
vivax positive, and
Plasmodia
-negative. Data imported into Excel , 1 st derivative calculated by taking the slope of the raw data. 1 st derivative data imported into JMP software and multivariate discriminant analysis performed on all spectra. Mahalanobis distances calculated for each classification group for each replicate.
Algorithm Development.
Identification algorithms developed to determine
P. falciparum
infection,
P. vivax
infection, or no infection based on processed IR spectra. The algorithms consists of a set of vectors that are multiplied with the first derivative spectra of an unknown sample to be identified. For algorithm development, the full set of absorbance values (all optical frequencies) is replaced by a much smaller subset of data containing 350 key optical frequencies for identification.
RESULTS
Figure 3. Visual Images, 740X
magnification. P. vivax infected red blood cells (left, blue arrow) and
P. falciparum
infected red blood cells (right, red arrow). Each sample was visually located, then the microscope was switched to IR mode to collect reflectance absorbance spectra from the center 13x13 m square. Visual images of
P. vivax
and
P. falciparum
infected red blood cells at 740X magnification are shown in Figure 3. Spectra were taken from the center square; all other IR light was blocked off by perpendicular apertures. From the FTIR absorbance spectra,
P. vivax
and
P. falciparum
cannot be visually distinguished. From multivariate analysis, Mahalanobis distances were calculated for each replicate to every other replicate. It was found that the longest within-group distances are small (~10 3 ) when compared to the shortest across-group distances (~10 12 ). Cross validation testing was used to evaluate the accuracy of the developed algorithm for
Plasmodium
spp. detection. The algorithm correctly identified 240 out of 240 true positives and 80 out of 80 true negatives.
The sensitivity of the P.f. identification algorithm was 98.4-100% (95%CI) and the specificity was 97.7-100% (95%CI). The sensitivity of the P.v. identification algorithm was 95.4%-100% (95%CI) and the specificity was 98.8%-100%(95%CI).
aperture 74x Objective
Detector 2
CONCLUSION
Initial results indicate that RBCs infected with
P.f.
can be differentiated from RBCs infected with
P.v.
in thin film blood smears using FTIR microspectroscopy with high sensitivity and specificity. This method is reagent-less and automated (results provided by computer) and is capable of detecting a single
Plasmodia
parasite. Further study with slides from both clinical
P.f.
and clinical
P.v.
from a larger number of cases will be needed to determine the clinical utility of FTIR microspectroscopy for diagnosis and such a study is underway. Equipment modifications to examine a large number of RBCs in parallel are also underway to improve diagnostic throughput.
Sample
IR in
ACKNOWLEDGEMENTS
This work is supported by the U.S Army Medical Research and Materiel Command under contract No.W81XWH 09-C-0019. The views, opinions and/or findings contained in this report are those of the authors and should not be construed as an official Department of the Army position, policy or decision unless so designated by other documentatio
“In the conduct of research where humans are the subjects, the investigator(s) adhered to the policies regarding the protection of human subjects as prescribed by Code of Federal Regulations (CFR) Title 45, Volume 1, Part 46; Title 32, Chapter 1, Part 219; and Title 21, Chapter 1, Part 50 (Protection of Human Subjects).”
Figure 1
. Hyperion 1000™ optical beam path.
Figure 2
. Bruker Hyperion 1000™ IR microscope and Tensor™ 27 FTIR spectrometer
.
Automated Reagent-less Differentiation of Three Drug Susceptible Strains of P. falciparum from Three Drug Resistant Strains of P. falciparum in Human Thin Film Blood Smears Using FTIR Microspectroscopy
by Kenneth A. Puzey, Dr. Bryan Holmes, Dr. Adam Hunt, and McKale Santin of QuantaSpec, Inc. Contact: [email protected]
ABSTRACT
In some regions of the world malaria parasite drug resistance is present in 50% of cases. Unfortunately, tests to determine drug resistance are not clinically available forcing health ministries and doctors to make difficult choices. An economical clinical test for drug resistance would enable doctors to administer less expensive chloroquine to susceptible cases, lowering health costs and slowing the spread of resistance to newer drugs. The objective of this study was a preliminary evaluation of the utility of FTIR microspectroscopy for differentiating red blood cells infected with drug resistant strains and drug susceptible strains of
P. falciparum.
120 Geimsa-stained thin film blood smear slides were prepared with drug-susceptible ring stage
P. falciparum
from culture (40 slides strain 3D7, 40 slides strain 1776, 40 slides D6), and 120 Geimsa-stained thin film blood smear slides were prepare with drug-resistant ring stage
P. falciparum
from culture (40 slides strain HB3, 40 slides strain Dd2, 40 slides strain 7G8). Negative controls included 40 Geimsa-stained thin film blood smear slides of uninfected human blood as well as human blood infected with
Salmonella
from culture (40 slides). Additional
P. falciparum
negative controls included 40 clinical Geimsa-stained
P. vivax
slides collected and verified by expert microscopy (EM). Infrared spectra were measured from a small area of each slide (~13 microns x13 microns) typically containing only one red blood cell. Algorithms were written to differentiate red blood cells infected with
P. falciparum
, red blood cells infected with
P. vivax
, red blood cells infected with
Salmonella
and uninfected red blood cells based on their infrared spectrum. Algorithms were tested by cross-validation. For drug susceptible strains, sensitivity was 97% to 100% and specificity was 98.7% to 100% (95% CI). For drug resistant strains sensitivity was 97% to 100% and specificity was 98.7% to 100% (95% CI). These results suggest that FTIR spectroscopy may be useful for automated reagent-less differentiation of drug resistant and drug susceptible strains of
P. falciparum
in thin film blood smears. This capability could enable more cost effective case management and reduce the spread of drug resistance to newer drugs. microscope slides (transparent in the visible region but highly reflective in the IR). Samples were fixed and stained with a 10% Giemsa solution.
Spectral Data Collection.
1000 infrared microscope and a Bruker Tensor A Bruker Hyperion 27 FTIR spectrometer were used to collect the spectral data (glowbar IR source/ liquid nitrogen-cooled MCT detector). 74X reflective objective used to collect spectra from a 13x13 m area of a sing-cell layer of each thin film smear (1-3 RBCs). Mid-IR spectra collected from 4000cm -1 to 600cm -1 at a spectral resolution of 2cm -1 . 100 scans/measurement. Background measurements taken from an adjacent, blank 13x13 m area of each slide, subtracted using Opus 6.5 software.
Data Processing.
Raw spectral data organized into 3 classification groups based on the identity of the spectral sample: drug susceptible
P.f.
-positive, drug-resistant
P.f.
-positive, and
P.f.
-negative. Data imported into Excel , 1 st derivative calculated by taking the slope of the raw data. 1 st derivative data imported into JMP software and multivariate discriminant analysis performed on all spectra. Mahalanobis distances calculated for each classification group for each replicate.
Algorithm Development.
Identification algorithms developed to differentiate drug-susceptible
P.f.
positive from drug- resistant
P.f.-
positive from
P.f
.-negative infection based on processed IR spectra. The algorithm consists of a set of vectors that are multiplied with the first derivative spectra of an unknown sample to be identified. For algorithm development, the full set of absorbance values (all optical frequencies) is replaced by a much smaller subset of data containing 350 key optical frequencies for identification.
INTRODUCTION
Each year, there are an estimated 250 million malaria cases and approximately 1 million malaria related deaths. Fundamental to reducing the burden of malaria infection and improving patient outcome is rapid and accurate diagnosis. Field diagnosis and treatment of malarial infection in malaria-endemic regions remains a problem, and is becoming increasingly difficult due to malaria parasite drug resistance. Major methods for malaria diagnosis (expert microscopy and rapid diagnostic tests) are unable to detect drug resistance prior to treatment, and instead are used to monitor for treatment failure. This method is time consuming, with prolonged periods of patient follow up, and is costly due to the need for multiple tests.
Regardless of the species of malaria, all drug resistance mechanisms involve genetic and chemical differences in the parasite. Our present study investigates the feasibility of using infrared (IR) microspectroscopy as an alternative diagnostic approach that can overcome the limitations inherent to diagnosis based on analysis of a visible image or by reagent-based assays. Fourier Transform Infrared (FTIR) microspectroscopy can probe the entire chemistry of an intact biological cell with IR light instead of reagents. The chemical differences between strains provides the basis for this detection technology. The goal of this research was to evaluate FTIR microspectroscopy for automatically differentiating drug susceptible
P. falciparum
from drug resistant
P. falciparum
in thin-film blood smears.
Actual 3D7 7G8 1776 D6 Dd2 HB3
P. vivax Salmonella
UIB 3D7 1.8e4
7.8e12
3.5e13
1.9e13
5.7e13
3.8e13
2.3e14
3.1e13
1.8e13
7G8
7.8e12
5.5e3
1.1e13
55e12 2.6e13
1.3e13
1.6e14
1.1e13
3.8e12
Mahalanobis Distances 1776
3.5e13
D6
1.9e13
Dd2
5.7e13
1.1e13
1.1e4
4.7e12
3.4e12
2.8e11
8.7e13
7.4e11
3.7e12
5.5e12
4.7e12
1.6e4
1.2e13
6.3e12
1.2e14
2.9e12
1.6e12
2.6e13
3.4e12
1.2e13
7.3e3
2.5e12
6.0e13
3.9e12
1.2e13
HB3
3.8e13
1.3e13
2.8e11
6.3e12
2.5e12
3.4e3
8.2e13
1.1e12
4.9e12
P. vivax
2.3e14
1.6e14
8.7e13
1.2e14
6.0e13
8.2e13
7.2e3
9.3e13
1.2e14
Salmonella
3.1e13
1.1e13
7.4e11
2.9e12
3.9e12
1.1e12
9.3e13
1.2e4
2.5e12
UIB
1.8E13
3.8e12
3.7e12
1.6e12
1.2e13
4.9e12
1.2e14
2.5e12
2.4e4
Table 1. Calculated Mahalanobis Distances.
The vertical column represents the actual identity of the sample and the horizontal row represents the comparison group. Values were calculated using all optical frequencies measured from 4000-600cm -1 . Values in green represent the furthest distance between samples in the same identity group, and values in red represent the closest distance between sample from different identity groups.
MATERIALS and METHODS
Positive and Negative Controls.
Uninfected negative controls: human blood.
Salmonella/ P. vivax infected
negative controls: uninfected blood spiked with
Salmonella
SL1344,
P. vivax
clinical cases from India.
P. falciparum
drug susceptible: uninfected blood spiked with strains 3D7, or 1776, or D6.
P. falciparum
drug resistant: uninfected blood spiked with strains HB3, or Dd2, or 7G8.
Sample Preparation.
40 thin-film Blood smears prepared per group. All samples prepared on low-e
RESULTS
Spectra in the mid-IR region of drug susceptible
P. falciparum
D6 and drug resistant
P. falciparum
Hb3 are shown in Figure 1. From the FTIR absorbance spectra, drug susceptible and drug resistant species cannot be visually distinguished. Figure 2 shows the 1 st derivative of the absorbance data for drug susceptible
P.f
D6 and drug resistant
P.f
Hb3. Table 1 shows the computed Mahalanobis distances using all optical frequencies. The chart shows within-group maximum distances (green, diagonal values) and between-group minimum distances (red values). It was found that the longest within-group distances are small (~10 3 ) when compared to the across-group shortest distances (~10 12 ). Cross validation testing was used to evaluate the accuracy of the developed algorithms for drug susceptible
P.f
positive, drug resistant
P.f
positive, and
P.f
negative. The algorithm correctly identified 120/120 drug susceptible
P.f
replicates, 120/120 drug resistant
P.f
replicates and 120/120
P.f
negatives.
The sensitivity of the developed algorithm for drug-susceptible P.f. was 97-100% (95%CI) and the specificity was 98.7-100% (95%CI). The sensitivity of the developed algorithm for drug-resistant P.f.
was
97-100%(95%CI) and the specificity was 98.7-100% (95%CI).
CONCLUSION
Figure 1. Absorbance Spectra.
40 absorbance spectra from drug susceptible
P. falciparum
D6 (left) and 40 absorbance spectra from drug resistant
P. falciparum
Hb3
(right).
Figure 2. 1 st Derivative of Absorbance Spectra.
40 1 st derivatives from drug susceptible
P. falciparum
D6 spectra (left) and 40 1 st derivatives from drug resistant
P. falciparum
Hb3 spectra
(right).
Initial results indicate that FTIR IR microscopy can differentiate drug-susceptible and drug-resistant strains of
P.f.
(for the strains that were studied). Additional studies with additional strains would be of interest to determine if the initial results are valid for a wider variety of strains. In addition, it was found that IR spectra could be used to accurately differentiate all six strains from each other as well as from
P.v.
and negative controls with sensitivity of 91.19-100%(95%CI) and with a specificity of 98.98 100%(95%CI). Therefore, further study of FTIR microspectroscopy as an alternative diagnostic method is warranted.
ACKNOWLEDGEMENTS
This work is supported by the U.S Army Medical Research and Materiel Command under contract No.W81XWH 09-C-0019. The views, opinions and/or findings contained in this report are those of the authors and should not be construed as an official Department of the Army position, policy or decision unless so designated by other documentation.
“In the conduct of research where humans are the subjects, the investigator(s) adhered to the policies regarding the protection of human subjects as prescribed by Code of Federal Regulations (CFR) Title 45, Volume 1, Part 46; Title 32, Chapter 1, Part 219; and Title 21, Chapter 1, Part 50 (Protection of Human Subjects).”