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Thursday 3/1 New TOC #s #4: Ch. 21.2 #1-6 #5: Classifying Theobroma cacao activity Part 1 - Inquiry #6: Classifying Theobroma cacao activity Part INTERPRETING CLADOGRAMS BIG IDEAS: PHYLOGENIES DEPICT ANCESTOR AND DESCENDENT RELATIONSHIPS AMONG ORGANISMS BASED ON HOMOLOGY THESE EVOLUTIONARY RELATIONSHIPS ARE REPRESENTED BY CLADOGRAMS, BRANCHING DIAGRAMS THAT ORGANIZE THOSE RELATIONSHIPS Reading Cladograms Read like a family tree: show patterns of shared ancestry between lineages. • When an ancestral lineage splits: speciation is indicated due to the “arrival” of some new trait. Each lineage has unique traits to itself alone and traits that are shared with other lineages. each lineage has ancestors that are unique to that lineage and ancestors that are shared with other lineages — common ancestors. Reading Cladogram: Identifying Clades Using a cladogram, it is easy to tell if a group of lineages forms a clade, a group that includes a common ancestor and all the descendants (living and extinct) of that ancestor. Imagine clipping a single branch off the phylogeny all of the organisms on that pruned branch make up a clade So everything in the pink circle is a clade (common ancestor and all descendants) Quick Question Looking at the image to the right: Which of the boxes in the figure depict a clade (if any)? Why? Reading Cladograms: Clades Clades are nested within one another they form a nested hierarchy. A clade may include many thousands of species or just a few. Interpreting Cladograms Cladograms can be misinterpreted. They do not imply that some organisms are more "advanced" than others. When reading a cladogram, it is important to keep three things in mind (mis)Interpreting Cladograms: One Evolution produces a pattern of relationships among lineages that is tree-like, i.e. branching. Evolution does not produce step-wise relationships of one taxa becoming another and so on. (mis)Interpreting Cladograms: Two We tend to read phylogenies from left to right, just as we read text. Please note, however, that there is NO correlation between a cladogram from reading left to right and "advancement“ or “progression”. (mis)Interpreting Cladograms: Three For any speciation event on a phylogeny, the choice of which lineage goes to the right and which goes to the left is arbitrary. The following phylogenies are equivalent: Quick Question This is a cladogram of vertebrates. What do you think are represented by the red lines? Creation of Cladograms Given a set of observations, phylogenetic analysis seeks to find the simplest branching relationships between organisms to depict their evolution. Heritable traits possessed by organisms, characters, are used to compare the organisms being studied. • Characters can be compared across organisms • physical traits • genetic sequences • behavioral traits. BUT HOW DO WE CONSTRUCT A CLADOGRAM? 3 Alternative, mutually exclusive Cladograms How Do We Choose Between Them? INGROUP ORGANISMS Characters PP RD CE Fur/Mane No Yes Yes Yes Toes/Foot Many Toes One Hoof One Hoof One Hoof Wings No No Yes Yes Horn No No (Not an Ancestor, but a Eyes Yes Stand-in to represent the Yes TailAncestral Condition) Yes Yes No Yes Yes Yes Yes Yes Mouth Yes Yes Yes Outgroup Primitive (ancestral) State Yes Derived States INGROUP ORGANISMS Characters Fur/Mane Toes/Foot Wings Horn Eyes Tail Mouth Outgroup PP RD CE No Many Toes No No Yes Yes Yes Yes One Hoof No No Yes Yes Yes Yes One Hoof Yes No Yes Yes Yes Yes One Hoof Yes Yes Yes Yes Yes 3 Steps (evolutionary transitions from ancestral derived) to explain this tree Derived character states found in only one organism separate them from other organisms Horn Wings Fur/Mane One Hoof Ancestral characters shared by all taxa link organisms together Eyes Tail Mouth Taxa Characters Fur/Mane Toes/Foot Wings Outgroup RD PP CE No Many Toes No Yes One Hoof Yes Yes One Hoof No Yes One Hoof Yes Loss of Wings 4 Steps (with wings developing convergently) OR 4 Steps (with wings developing in ancestral pony, and lost in PP) Wings Wings Fur/Mane One Hoof Wings Taxa Characters Fur/Mane Toes/Foot Wings Outgroup CE PP RD No Many Toes No Yes One Hoof Yes Yes One Hoof No Yes One Hoof Yes Loss of Wings 4 Steps (with wings developing convergently) OR 4 Steps (with wings developing in ancestral pony, and lost in PP) Wings Wings Fur/Mane One Hoof Wings 3 Steps The preferred cladogram is the simplest! (Least number of assumptions) So, which cladogram is the best description of the evolution of these little ponies? 4 Steps 4 Steps Lets build a Chocolate Cladogram!