Transcript HPWREN and International Collaborations - pragma

PRAGMA Grid Testbed
&
Routine-basis Experiments
May – October 2005
Cindy Zheng
Pacific Rim Application and Grid Middleware Assembly
San Diego Supercomputer Center
University of California, San Diego
http://pragma-goc.rocksclusters.org
Cindy Zheng, PRAGMA9, 10/21/2005
PRAGMA Grid Testbed
UZurich, Switzerland
NCSA, USA
KISTI, Korea
CNIC, China
UMC, USA
AIST, Japan
GUCAS, China
SDSC, USA
TITECH, Japan
UoHyd, India
NCHC, Taiwan
CICESE, Mexico
KU, Thailand
ASCC, Taiwan
UNAM, Mexico
USM, Malaysia
BII, Singapore
MU, Australia
UChile, Chile
http://pragma-goc.rocksclusters.org
Cindy Zheng, PRAGMA9, 10/21/2005
PRAGMA Grid resources
http://pragma-goc.rocksclusters.org/pragma-doc/resources.html
Cindy Zheng, PRAGMA9, 10/21/2005
QMMD
http://pragma-goc.rocksclusters.org/applications/qmmd/qmmd_requirement.html
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Quantum mechanics application
Ninf-G based
Driver: Hiroshi Takemiya (AIST)
Running on 6+4 sites for 5 days
Ready on 12 sites:
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AIST: Yoshio Tanaka, Yusuke Tanimura
ASCC: Hurng-Chun Lee, Mike Chiang
CNIC: Kai Nan, Kevin Dong
KISTI: Jysoo Lee, Jae-Hyuck Kwak
KU: Somsak Sriprayoonsakul, Sugree Phatanapherom
NCHC: Weicheng Huang, Chien-Lin Huang
NCSA: Radha Nandkumar, Tom Roney
SDSC: Mason Katz, Cindy Zheng
TITECH: Satoshi Matsuoka, Hitoshi Aoki
UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon
UoHyd: Arun Agarwal, Rajeev Wankar, Neelakanta Reddy
USM(hawk): Habibah Wahab, Suhaini Ahmad
Cindy Zheng, PRAGMA9, 10/21/2005
Savannah
http://pragma-goc.rocksclusters.org/applications/savannah/default.html
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Wildfire simulation
Nimrod/G based
Driver: Colin Enticott (MU)
Ready on 10 sites:
– AIST: Yoshio Tanaka, Yusuke Tanimura
– ASCC: Hurng-Chun, Lee, Mike Chiang
– KISTI: Jysoo Lee, Jae-Hyuck Kwak
– KU: Sugree Phatanapherom, Somsak
Sriprayoonsakul
– MU: David Abramson
– NCHC: Weicheng Huang, Chien-Lin Huang
– NCSA: Radha Nandkumar, Tom Roney
– SDSC: Mason Katz, Cindy Zheng
– TITECH: Satoshi Matsuoka, Hitoshi Aoki
– UNAM: Jose Luis Gordillo Ruiz, Eduardo
Murrieta Leon
– UoHyd: Arun Agarwal, Rajeev Wankar,
Neelakanta Reddy
Cindy Zheng, PRAGMA9, 10/21/2005
Gfarm
http://pragma-goc.rocksclusters.org/applications/gfarm/gfarm.html
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Gfarm – grid virtual file system
Development lead: Osamu Tatebe (AIST)
Ready on 7 sites:
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AIST: Yusuke Tanimura, Yoshio Tanaka
ASCC: Mike Chiang, Hurng-Chun, Lee
KISTI: Jae-Hyuck Kwak, Jysoo Lee
NCHC: Chien-Lin Huang, Weicheng Huang
NCSA: Tom Roney, Radha Nandkumar
SDSC: Cindy Zheng, Mason Katz
TITECH: Hitoshi Aoki, Satoshi Matsuoka
Cindy Zheng, PRAGMA9, 10/21/2005
Community Scheduling Framework
http://pragma-goc.rocksclusters.org/softdepot/zding_csf.ppt
• Interface GT4 and local schedulers
• Implementation and deployment lead: XiaoHui Wei and
ZhaoHui Ding (JLU)
• Supported by:
– SDSC: Wilfred Li, Cindy Zheng
– AIST: Yoshio Tanaka
PBS
PBS
CSF
SGE
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PBS
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Cindy Zheng, PRAGMA9, 10/21/2005
iGAP
http://pragma-goc.rocksclusters.org/applications/igap/igap.html
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Genome annotation pipeline
Use CSF/Gfarm
Driver: Wilfred Li (SDSC)
Ready on 7 sites:
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AIST: Yoshio Tanaka, Yusuke Tanimura
ASCC: Hurng-Chun Lee, Mike Chiang
KISTI: Jysoo Lee, Jae-Hyuck Kwak
NCHC: Weicheng Huang, Chien-Lin Huang
NCSA: Radha Nandkumar, Tom Roney
SDSC: Mason Katz, Cindy Zheng
TITECH: Satoshi Matsuoka, Hitoshi Aoki
Cindy Zheng, PRAGMA9, 10/21/2005
SCMSWeb
http://pragma-goc.rocksclusters.org/scmsweb/
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Grid monitoring + accounting
Development lead: KU: Putchong Uthayopas, Somsak
Sriprayoonsakul, Sugree Phatanapherom
Collaborations:
– Solaris porting at CICESE: Raul Hazas, Areli Garcia
– IA64 porting at CNIC: Kevin Dong
Deployed on 15 sites:
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AIST: Yoshio Tanaka, Yusuke Tanimura
ASCC: Hurng-Chun Lee, Mike Chiang
BII: Stephen Wong, Damien Leong Wye Kit
CICESE: Raul Hazas, Salvador Castaneda, Julian Delgado
CNIC: Kai Nan, Kevin Dong
KISTI: Jysoo Lee, Jae-Hyuck Kwak
KU: Sugree Phatanapherom, Somsak Sriprayoonsakul
NCHC: Weicheng Huang, Chien-Lin Huang
NCSA: Radha Nandkumar, Tom Roney
SDSC: Mason Katz, Cindy Zheng
TITECH: Satoshi Matsuoka, Hitoshi Aoki
UChile: Alejandro Jofre, Juan Carlos Maureira
UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon
UoHyd: Arun Agarwal, Rajeev Wankar, Neelakanta Reddy
USM(hawk): Habibah Wahab, Suhaini Ahmad
Cindy Zheng, PRAGMA9, 10/21/2005
MOGAS
http://ntu-cg.ntu.edu.sg/pragma/gridacctinfo
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Grid accounting system
Development lead: NTU – Francis Lee, Junwei Lee
Deployed on 7 sites:
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AIST: Yoshio Tanaka, Yusuke Tanimura
KISTI: Jysoo Lee, Jae-Hyuck Kwak
NCSA: Radha Nandkumar, Tom Roney
SDSC: Mason Katz, Cindy Zheng
TITECH: Satoshi Matsuoka, Hitoshi Aoki
UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon
USM(hawk): Habibah Wahab, Suhaini Ahmad
Cindy Zheng, PRAGMA9, 10/21/2005
Grid-enabling Applications
• Ocean science (CICESE, Mexico)
– IGrid05 demo
Raul Hazas, Luis Farfán, Salvador Castaneda,
Julian Delgado
• GAMESS/APBS (UZurich, Switzerland)
Kim Baldridge, Celine Amoreira
• FLARM, Drug-design (CNIC, China)
Bin Shen, Kevin Dong
• San Andreas Fault simulation (iGEON)
Mian Liu (UMC), Huai Zhang (GUCAS)
Cindy Zheng, PRAGMA9, 10/21/2005
Ninf-G/NMI/Rocks Integration
• Ninf-G-2.4/NMI
– Lead integrators:
• Yoshio Tanaka (AIST)
• Mats Rynge (NMI)
• Ninf-G 2.4 Rocks Roll
– Lead integrators:
• Mason Katz (SDSC)
• Yoshio Tanaka (AIST)
Cindy Zheng, PRAGMA9, 10/21/2005
GAMA/Naregi-CA Integration
• Naregi-CA - certificate authorization system
• Gama - trust management system
• Collaborators:
– Naregi, Japan
• Shinichi Mineo
• Takto Okuno
– SDSC, USA
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Sandeep Chandra
Kurt Mueller
Mason Katz
Cindy Zheng
Cindy Zheng, PRAGMA9, 10/21/2005
GAMA
Network Measurements
http://pragma-goc.rocksclusters.org/pragma-grid-status/testbed_amp.htm
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Deployed NLANR AMP to all testbed sites
AMP data map on pragma-goc
AMP map software
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PRIME project
AMP data interface
Collaborators:
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NLANR: Tony McGregor, Ronn Ritke, Bud Hale,
Jeremy Kallstrom
UCSD: Peter Arzberger, Cindy Zheng, John Lee
CNIC: Kai Nan, Kevin Dong
UChile: Alejandro Jofre, Juan Carlos Maureira
UoHyd: Arun Agarwal, Vinod Kumar
USM(hawk): Suhaini Ahmad, Habibah Wahab,
Ruzaimi Azizan
UZurich: Kim Baldrige, Wibke Sudholt
Cindy Zheng, PRAGMA9, 10/21/2005
Group paper
Issues and Methods for Building a Multi-Application International Grid Resource
Cindy Zheng, Mason Katz, Peter Arzberger, Philip M. Papadopoulos
University of California, San Diego, USA
Yoshio Tanaka, Yusuke Tanimura, Osamu Tatebe
National Institute of Advanced Industrial Science and Technology, Japan
David Abramson, Colin Enticott, Slavisa Garic, Shahaan Ayuub
Monash University, Australia
Putchong Uthayopas, Somsak Sriprayoonsakul, Sugree Phatanapherom
Kasetsart University, Thailand
Jae-Hyuck Kwak
Korea Institute of Science and Technology Information, Korea
Cindy Zheng, PRAGMA9, 10/21/2005
Thank you
http://pragma-goc.rocksclusters.org
Cindy Zheng, PRAGMA9, 10/21/2005