Transcript Enrichment analysis using CPDB

Gene set analysis by
using CPDB
By NFU Biology Algorithm lab
What is CPDB
• CPDB is a network tools for analysis the gene
data online.
Gene set analysis
Step1:
Step 2:Click
Click
thethe
gene
set
over
analysis
representation
analysis
Step 3: past the
gene list or upload
the gene list file
etc: list.txt
Gene set analysis(cont)
Step 4: paste the
gene list or upload
the gene list file
Ex: list.txt
Analysis result
The Analysis result at
1.Network neighborhood-based entity sets (NESTs)
2.Pathway-based sets
3.Gene ontology categories
4.Protein complex-based gene sets
Analysis result(cont)
The list from upload , and how many gene
ID from the database can be found.
Click the blank , users can be set the
size, connectivity index or p-value
Click the Pathway-based sets, users
can be choice the database form
Signalink , Kegg….
Analysis result(cont)
The
result from
upload
can
Download
the name
result
from
The pathway
and
be
found at database.
here.
candidates contained,source.
Thanks For Watching
Producer by National Formosa University Biology Algorithm lab