Iván - R Basics Workshop

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Transcript Iván - R Basics Workshop

R basics workshop
J. Sebastián Tello
Iván Jiménez
Center for Conservation and Sustainable Development
Iván Jiménez
MBG
co-instructor
J. Sebastián Tello
MBG
co-instructor
John Hodge
UMSL
Teaching
Assistant
Wendy Applequist, MBG; Maribel Arenas Navarro, UNAM and
MBG Bascom Fellow; Rani Asmarayani, UMSL; Joshua
Atteberry, PRE and MBG REU; Maria Wilhelmina Barbosa de
Oliveira Pil, UMSL; Elizabeth Biro, WASHU; David Bogler, MBG;
Alonso Bussalleu, UMSL; Steven Callen, SLU; Susanne DiSalvo,
WASHU; Tracy Douglas, WASHU; Matthew Greg, SLU; Jennifer
Gruhn, WASHU; Pu Huang, UMSL; Mari Jaramillo, UMSL;
Corinne Kozlowski, SLZ; Shih-Hui Liu SLU; Quinn Long, MBG;
Isabel Loza, UMSL; Chrissy McAllister, SLU and P; Lauren
Merchant, SLU; Allison Miller, SLU; Jonathan Myers, WASHU;
Shaunak Mulani, WASHU; Nosayaba Osazuwa-Peters, SLU
Cancer Center; Patrick Raines, UMSL; Heritiana Ranarivelo,
UMSL; Zongxin Ren, SLU; Julieth Serrano, MBG Bascom Fellow;
Kimberley Sukhum, WASHU; Elvis Valderrama, UMSL; Anna
Weyher, WASHU; Kathleen Zelle, WASHU.
Objective
• To teach the basic knowledge necessary to use
R independently, thus helping participants
initiate their own process of learning the
specific tools needed for their research.
Logistics
• 3 days, 2 sessions each day: 8:00 am to noon and
2:00 pm to 5:00 pm
• Limited Wifi access, no internet cable connections
Network: MRCR_CbecEDU
key: abbaabbaab
Group 1
Wendy Applequist, MBG
Maribel Arenas Navarro, UNAM and MBG Bascom Fellow
Rani Asmarayani, UMSL
Joshua Atteberry, PRE and MBG REU
Group 2
Maria Wilhelmina Barbosa de Oliveira Pil, UMSL
Elizabeth Biro, WASHU
David Bogler, MBG
Alonso Bussalleu, UMSL
Group 3
Steven Callen, SLU
Susanne DiSalvo, WASHU
Tracy Douglas, WASHU
Matthew Greg, SLU
Network: MRCR_Cbec
Group 1
Jennifer Gruhn, WASHU
Pu Huang, UMSL
Mari Jaramillo, UMSL
Corinne Kozlowski, SLZ
Group 2
Shih-Hui Liu SLU
Quinn Long, MBG
Isabel Loza, UMSL
Chrissy McAllister, SLU and P
Group 3
Lauren Merchant, SLU
Allison Miller, SLU
Jonathan Myers, WASHU
Shaunak Mulani, WASHU
key: garden07
Network: MRCR_CBI1
key: garden07
Group 1
Nosayaba Osazuwa-Peters, SLU Cancer Center
Patrick Raines, UMSL
Heritiana Ranarivelo, UMSL
Zongxin Ren, SLU
Group 2
Julieth Serrano, MBG Bascom Fellow
Kimberley Sukhum, WASHU
Elvis Valderrama, UMSL
Anna Weyher, WASHU
Group 3
Kathleen Zelle, WASHU
John Hodge, UMSL
Logistics
• 3 days, 2 sessions each day: 8:00 am to noon and
2:00 pm to 5:00 pm
• Limited Wifi access, no internet cable connections
• Website:
https://sites.google.com/site/rbasicsworkshop/home
General contents
Day 1
1. Introduction – Iván
2. Functions and arguments – Sebastián
3. Objects – Sebastián
4. Opening and saving files – Sebastián
General contents
Day 2
3. Data generation – Iván
4. Operators – Iván
5. Manipulating data and objects in R – Iván
General contents
Day 3
6. Graphics in R – Iván
7. Flow control – loops and conditionals – Sebastián
8. Advice on writing R scripts – Sebastián
General contents
Day 1
1. Introduction – Iván
2. Functions and arguments – Sebastián
3. Objects – Sebastián
4. Opening and saving files – Sebastián
Day 2
3. Data generation – Iván
4. Operators – Iván
5. Manipulating data and objects in R – Iván
Day 3
6. Graphics in R – Iván
7. Flow control – loops and conditionals – Sebastián
8. Advice on writing R scripts – Sebastián
1. Introduction
What is R?
R is a language and environment for statistical
computing and graphics. Environment = planned and
coherent system of flexible tools (“An Introduction to
R” by R Core Team).
R can be used for: data manipulation, data analysis,
creating graphs, designing and running computer
simulations.
R is extended by thousands of packages.
How to get R
• From www.r-project.org. R is a GNU project.
Three windows in R
Console
Editor
Graphics
Exersice 1: a first session in R
• Objective: experiencing R